Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03620 and BPHYT_RS03625 overlap by 4 nucleotides BPHYT_RS03625 and BPHYT_RS03630 overlap by 8 nucleotides BPHYT_RS03630 and BPHYT_RS03635 are separated by 72 nucleotides
BPHYT_RS03620: BPHYT_RS03620 - poly(A) polymerase, at 822,634 to 824,223
_RS03620
BPHYT_RS03625: BPHYT_RS03625 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 824,220 to 824,906
_RS03625
BPHYT_RS03630: BPHYT_RS03630 - DnaA regulatory inactivator Hda, at 824,899 to 825,669
_RS03630
BPHYT_RS03635: BPHYT_RS03635 - ABC transporter permease, at 825,742 to 826,818
_RS03635
Position (kb) 824
825 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.445 kb on - strand, within BPHYT_RS03620 at 823.542 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.574 kb on + strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 824.198 kb on - strand at 824.354 kb on - strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.467 kb on + strand, within BPHYT_RS03625 at 824.468 kb on - strand, within BPHYT_RS03625 at 824.637 kb on + strand, within BPHYT_RS03625 at 824.638 kb on - strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.919 kb on + strand at 825.673 kb on - strand at 825.729 kb on - strand at 825.751 kb on - strand at 825.771 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 823,444 + BPHYT_RS03620 0.51 -0.4 823,444 + BPHYT_RS03620 0.51 -2.1 823,445 - BPHYT_RS03620 0.51 +0.4 823,542 - BPHYT_RS03620 0.57 +0.9 823,572 - BPHYT_RS03620 0.59 +1.7 823,572 - BPHYT_RS03620 0.59 -1.2 823,572 - BPHYT_RS03620 0.59 -3.4 823,574 + BPHYT_RS03620 0.59 +0.0 823,575 - BPHYT_RS03620 0.59 -2.0 823,575 - BPHYT_RS03620 0.59 +1.2 823,575 - BPHYT_RS03620 0.59 +0.8 823,575 - BPHYT_RS03620 0.59 -2.5 824,198 - -0.3 824,354 - BPHYT_RS03625 0.20 +0.8 824,359 + BPHYT_RS03625 0.20 -1.7 824,359 + BPHYT_RS03625 0.20 -1.1 824,467 + BPHYT_RS03625 0.36 -2.6 824,468 - BPHYT_RS03625 0.36 -0.5 824,637 + BPHYT_RS03625 0.61 -3.0 824,638 - BPHYT_RS03625 0.61 -4.4 824,665 + BPHYT_RS03625 0.65 -2.6 824,665 + BPHYT_RS03625 0.65 -2.7 824,665 + BPHYT_RS03625 0.65 -3.1 824,701 + BPHYT_RS03625 0.70 -3.6 824,701 + BPHYT_RS03625 0.70 -1.3 824,764 + BPHYT_RS03625 0.79 -2.0 824,764 + BPHYT_RS03625 0.79 +0.6 824,919 + +0.6 825,673 - +1.1 825,729 - +0.3 825,751 - -0.0 825,771 - -4.5 825,833 - -0.0 825,833 - -0.5 825,833 - -0.1
Or see this region's nucleotide sequence