Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03465
Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vogels_fungal_media; pH 5.5 |
---|---|---|---|---|---|
remove | |||||
780,285 | - | BPHYT_RS03460 | 0.62 | -1.5 | |
780,473 | + | BPHYT_RS03460 | 0.74 | +3.1 | |
780,473 | + | BPHYT_RS03460 | 0.74 | -0.6 | |
780,474 | - | BPHYT_RS03460 | 0.74 | +0.2 | |
780,487 | + | BPHYT_RS03460 | 0.75 | -0.6 | |
781,022 | - | BPHYT_RS03465 | 0.16 | -1.6 | |
781,023 | + | BPHYT_RS03465 | 0.16 | +1.3 | |
781,038 | + | BPHYT_RS03465 | 0.18 | -2.7 | |
781,276 | + | BPHYT_RS03465 | 0.50 | -0.5 | |
781,276 | + | BPHYT_RS03465 | 0.50 | -0.1 | |
781,309 | + | BPHYT_RS03465 | 0.54 | -0.3 | |
781,309 | + | BPHYT_RS03465 | 0.54 | -2.1 | |
781,309 | + | BPHYT_RS03465 | 0.54 | +0.5 | |
781,443 | + | BPHYT_RS03465 | 0.72 | -1.4 | |
781,528 | - | BPHYT_RS03465 | 0.84 | -1.0 | |
781,707 | - | +0.1 | |||
781,890 | + | +0.1 | |||
782,082 | - | +0.8 | |||
782,082 | - | -0.4 | |||
782,212 | - | -0.6 | |||
782,212 | - | -0.4 | |||
782,258 | + | +0.1 | |||
782,258 | + | +0.2 | |||
782,289 | + | -0.1 | |||
782,388 | + | +0.5 | |||
782,394 | + | +0.5 | |||
782,397 | - | -0.0 | |||
782,400 | + | +0.8 | |||
782,400 | + | +0.1 | |||
782,459 | + | +0.8 | |||
782,459 | + | +0.3 | |||
782,460 | - | -0.1 | |||
782,460 | - | +0.5 |
Or see this region's nucleotide sequence