Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03335

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03330 and BPHYT_RS03335 are separated by 44 nucleotidesBPHYT_RS03335 and BPHYT_RS03340 are separated by 40 nucleotidesBPHYT_RS03340 and BPHYT_RS03345 are separated by 16 nucleotides BPHYT_RS03330: BPHYT_RS03330 - hypothetical protein, at 749,285 to 750,187 _RS03330 BPHYT_RS03335: BPHYT_RS03335 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 750,232 to 750,990 _RS03335 BPHYT_RS03340: BPHYT_RS03340 - D,D-heptose 1,7-bisphosphate phosphatase, at 751,031 to 751,585 _RS03340 BPHYT_RS03345: BPHYT_RS03345 - glycyl-tRNA synthetase subunit beta, at 751,602 to 753,701 _RS03345 Position (kb) 750 751Strain fitness (log2 ratio) -2 -1 0 1at 749.265 kb on + strandat 749.565 kb on + strand, within BPHYT_RS03330at 749.964 kb on + strand, within BPHYT_RS03330at 749.965 kb on - strand, within BPHYT_RS03330at 750.172 kb on + strandat 750.208 kb on + strandat 751.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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749,265 + -0.5
749,565 + BPHYT_RS03330 0.31 -0.3
749,964 + BPHYT_RS03330 0.75 -1.0
749,965 - BPHYT_RS03330 0.75 -1.4
750,172 + +1.4
750,208 + +0.6
751,597 - -1.9

Or see this region's nucleotide sequence