Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02865 and BPHYT_RS02870 are separated by 87 nucleotides BPHYT_RS02870 and BPHYT_RS02875 are separated by 73 nucleotides
BPHYT_RS02865: BPHYT_RS02865 - hypothetical protein, at 638,386 to 640,227
_RS02865
BPHYT_RS02870: BPHYT_RS02870 - formamidopyrimidine-DNA glycosylase, at 640,315 to 641,145
_RS02870
BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280
_RS02875
Position (kb) 640
641
642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 639.791 kb on + strand, within BPHYT_RS02865 at 640.257 kb on + strand at 640.257 kb on + strand at 640.270 kb on - strand at 640.275 kb on - strand at 640.275 kb on - strand at 640.310 kb on + strand at 640.311 kb on - strand at 640.363 kb on + strand at 640.364 kb on - strand at 640.364 kb on - strand at 640.364 kb on - strand at 640.364 kb on - strand at 640.402 kb on - strand, within BPHYT_RS02870 at 640.489 kb on + strand, within BPHYT_RS02870 at 640.489 kb on + strand, within BPHYT_RS02870 at 640.490 kb on - strand at 640.760 kb on + strand, within BPHYT_RS02870 at 640.761 kb on - strand, within BPHYT_RS02870 at 640.842 kb on + strand, within BPHYT_RS02870 at 640.843 kb on - strand, within BPHYT_RS02870 at 640.843 kb on - strand, within BPHYT_RS02870 at 640.843 kb on - strand, within BPHYT_RS02870 at 640.843 kb on - strand, within BPHYT_RS02870 at 640.843 kb on - strand, within BPHYT_RS02870 at 640.846 kb on + strand, within BPHYT_RS02870 at 640.846 kb on + strand, within BPHYT_RS02870 at 640.847 kb on - strand, within BPHYT_RS02870 at 640.847 kb on - strand, within BPHYT_RS02870 at 640.847 kb on - strand, within BPHYT_RS02870 at 641.020 kb on + strand, within BPHYT_RS02870 at 641.035 kb on + strand, within BPHYT_RS02870 at 641.036 kb on - strand, within BPHYT_RS02870 at 641.036 kb on - strand, within BPHYT_RS02870 at 641.119 kb on + strand at 641.119 kb on + strand at 641.120 kb on - strand at 641.144 kb on - strand at 641.144 kb on - strand at 641.166 kb on + strand at 641.166 kb on + strand at 641.167 kb on - strand at 641.367 kb on - strand, within BPHYT_RS02875 at 641.456 kb on + strand, within BPHYT_RS02875 at 641.457 kb on - strand, within BPHYT_RS02875 at 641.457 kb on - strand, within BPHYT_RS02875 at 641.460 kb on - strand, within BPHYT_RS02875 at 641.460 kb on - strand, within BPHYT_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 639,791 + BPHYT_RS02865 0.76 -3.8 640,257 + +0.3 640,257 + +0.3 640,270 - -1.6 640,275 - -0.9 640,275 - +0.0 640,310 + -0.3 640,311 - +0.5 640,363 + +0.1 640,364 - +0.4 640,364 - -0.3 640,364 - -0.4 640,364 - +1.0 640,402 - BPHYT_RS02870 0.10 -0.3 640,489 + BPHYT_RS02870 0.21 -0.3 640,489 + BPHYT_RS02870 0.21 +0.7 640,490 - -2.3 640,760 + BPHYT_RS02870 0.54 -1.8 640,761 - BPHYT_RS02870 0.54 -0.6 640,842 + BPHYT_RS02870 0.63 -2.9 640,843 - BPHYT_RS02870 0.64 +0.4 640,843 - BPHYT_RS02870 0.64 -2.4 640,843 - BPHYT_RS02870 0.64 +0.7 640,843 - BPHYT_RS02870 0.64 +0.6 640,843 - BPHYT_RS02870 0.64 +0.7 640,846 + BPHYT_RS02870 0.64 +0.9 640,846 + BPHYT_RS02870 0.64 -1.9 640,847 - BPHYT_RS02870 0.64 -1.4 640,847 - BPHYT_RS02870 0.64 +0.8 640,847 - BPHYT_RS02870 0.64 -1.6 641,020 + BPHYT_RS02870 0.85 +0.2 641,035 + BPHYT_RS02870 0.87 -2.0 641,036 - BPHYT_RS02870 0.87 -0.8 641,036 - BPHYT_RS02870 0.87 +0.5 641,119 + -2.0 641,119 + -0.1 641,120 - -1.7 641,144 - -0.1 641,144 - -0.7 641,166 + +1.3 641,166 + +0.2 641,167 - +0.2 641,367 - BPHYT_RS02875 0.14 -1.9 641,456 + BPHYT_RS02875 0.22 -3.1 641,457 - BPHYT_RS02875 0.22 +2.2 641,457 - BPHYT_RS02875 0.22 -0.4 641,460 - BPHYT_RS02875 0.23 -0.1 641,460 - BPHYT_RS02875 0.23 -1.4
Or see this region's nucleotide sequence