Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02795 and BPHYT_RS02800 are separated by 228 nucleotides BPHYT_RS02800 and BPHYT_RS02805 are separated by 25 nucleotides BPHYT_RS02805 and BPHYT_RS02810 are separated by 98 nucleotides
BPHYT_RS02795: BPHYT_RS02795 - glycosyl transferase, at 627,272 to 628,243
_RS02795
BPHYT_RS02800: BPHYT_RS02800 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 628,472 to 629,170
_RS02800
BPHYT_RS02805: BPHYT_RS02805 - maleylacetoacetate isomerase, at 629,196 to 629,840
_RS02805
BPHYT_RS02810: BPHYT_RS02810 - cell division protein FtsY, at 629,939 to 631,099
_RS02810
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.499 kb on + strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.294 kb on + strand at 628.295 kb on - strand at 628.321 kb on + strand at 628.322 kb on - strand at 628.330 kb on + strand at 628.330 kb on + strand at 628.331 kb on - strand at 628.416 kb on + strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.482 kb on + strand at 628.482 kb on + strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.553 kb on + strand, within BPHYT_RS02800 at 628.553 kb on + strand, within BPHYT_RS02800 at 628.554 kb on - strand, within BPHYT_RS02800 at 628.571 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.791 kb on - strand, within BPHYT_RS02800 at 629.030 kb on + strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.211 kb on + strand at 629.212 kb on - strand at 629.232 kb on + strand at 629.271 kb on + strand, within BPHYT_RS02805 at 629.271 kb on + strand, within BPHYT_RS02805 at 629.277 kb on + strand, within BPHYT_RS02805 at 629.278 kb on - strand, within BPHYT_RS02805 at 629.472 kb on + strand, within BPHYT_RS02805 at 629.542 kb on - strand, within BPHYT_RS02805 at 629.571 kb on + strand, within BPHYT_RS02805 at 629.571 kb on + strand, within BPHYT_RS02805 at 629.572 kb on - strand, within BPHYT_RS02805 at 629.741 kb on + strand, within BPHYT_RS02805 at 629.742 kb on - strand, within BPHYT_RS02805 at 629.747 kb on + strand, within BPHYT_RS02805 at 629.747 kb on + strand, within BPHYT_RS02805 at 629.748 kb on - strand, within BPHYT_RS02805 at 629.772 kb on + strand at 629.772 kb on + strand, within BPHYT_RS02805 at 629.773 kb on - strand, within BPHYT_RS02805 at 629.838 kb on + strand at 629.839 kb on - strand at 629.904 kb on + strand at 629.905 kb on - strand at 629.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 627,499 + BPHYT_RS02795 0.23 +1.0 627,611 - BPHYT_RS02795 0.35 -1.1 627,611 - BPHYT_RS02795 0.35 +0.0 627,612 + BPHYT_RS02795 0.35 +0.8 627,612 + BPHYT_RS02795 0.35 -0.2 627,612 + BPHYT_RS02795 0.35 +0.9 627,613 - BPHYT_RS02795 0.35 -0.3 627,613 - BPHYT_RS02795 0.35 +0.4 627,613 - BPHYT_RS02795 0.35 -0.1 627,952 - BPHYT_RS02795 0.70 -3.5 627,952 - BPHYT_RS02795 0.70 -0.7 628,129 - BPHYT_RS02795 0.88 +0.8 628,129 - BPHYT_RS02795 0.88 +0.5 628,294 + -1.5 628,295 - +0.5 628,321 + -3.2 628,322 - +1.6 628,330 + +0.2 628,330 + +2.1 628,331 - +0.4 628,416 + +1.2 628,459 - -2.4 628,459 - -0.8 628,479 - +0.1 628,479 - -1.4 628,479 - +0.7 628,482 + +0.1 628,482 + -1.5 628,483 - +0.2 628,483 - -0.2 628,483 - +1.2 628,553 + BPHYT_RS02800 0.12 -1.1 628,553 + BPHYT_RS02800 0.12 -0.1 628,554 - BPHYT_RS02800 0.12 -0.6 628,571 + BPHYT_RS02800 0.14 -0.5 628,790 + BPHYT_RS02800 0.45 -2.1 628,790 + BPHYT_RS02800 0.45 -0.5 628,790 + BPHYT_RS02800 0.45 +0.9 628,791 - BPHYT_RS02800 0.46 -0.2 629,030 + BPHYT_RS02800 0.80 -0.6 629,031 - BPHYT_RS02800 0.80 +0.2 629,031 - BPHYT_RS02800 0.80 -1.0 629,031 - BPHYT_RS02800 0.80 -2.8 629,205 + +0.3 629,205 + +0.8 629,205 + -0.6 629,205 + -0.4 629,206 - +0.5 629,206 - -0.1 629,206 - -0.1 629,206 - -2.0 629,206 - -0.5 629,211 + +0.6 629,212 - -0.2 629,232 + -0.9 629,271 + BPHYT_RS02805 0.12 +1.7 629,271 + BPHYT_RS02805 0.12 -1.4 629,277 + BPHYT_RS02805 0.13 -3.0 629,278 - BPHYT_RS02805 0.13 -0.5 629,472 + BPHYT_RS02805 0.43 -0.3 629,542 - BPHYT_RS02805 0.54 -2.3 629,571 + BPHYT_RS02805 0.58 +0.9 629,571 + BPHYT_RS02805 0.58 -0.3 629,572 - BPHYT_RS02805 0.58 -0.4 629,741 + BPHYT_RS02805 0.84 +0.3 629,742 - BPHYT_RS02805 0.85 -0.3 629,747 + BPHYT_RS02805 0.85 -2.5 629,747 + BPHYT_RS02805 0.85 -3.2 629,748 - BPHYT_RS02805 0.86 +0.1 629,772 + +2.7 629,772 + BPHYT_RS02805 0.89 -0.5 629,773 - BPHYT_RS02805 0.89 -0.3 629,838 + -0.6 629,839 - +0.0 629,904 + -1.2 629,905 - -1.4 629,917 + -0.4
Or see this region's nucleotide sequence