Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02800

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02795 and BPHYT_RS02800 are separated by 228 nucleotidesBPHYT_RS02800 and BPHYT_RS02805 are separated by 25 nucleotidesBPHYT_RS02805 and BPHYT_RS02810 are separated by 98 nucleotides BPHYT_RS02795: BPHYT_RS02795 - glycosyl transferase, at 627,272 to 628,243 _RS02795 BPHYT_RS02800: BPHYT_RS02800 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 628,472 to 629,170 _RS02800 BPHYT_RS02805: BPHYT_RS02805 - maleylacetoacetate isomerase, at 629,196 to 629,840 _RS02805 BPHYT_RS02810: BPHYT_RS02810 - cell division protein FtsY, at 629,939 to 631,099 _RS02810 Position (kb) 628 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 627.499 kb on + strand, within BPHYT_RS02795at 627.611 kb on - strand, within BPHYT_RS02795at 627.611 kb on - strand, within BPHYT_RS02795at 627.612 kb on + strand, within BPHYT_RS02795at 627.612 kb on + strand, within BPHYT_RS02795at 627.612 kb on + strand, within BPHYT_RS02795at 627.613 kb on - strand, within BPHYT_RS02795at 627.613 kb on - strand, within BPHYT_RS02795at 627.613 kb on - strand, within BPHYT_RS02795at 627.952 kb on - strand, within BPHYT_RS02795at 627.952 kb on - strand, within BPHYT_RS02795at 628.129 kb on - strand, within BPHYT_RS02795at 628.129 kb on - strand, within BPHYT_RS02795at 628.294 kb on + strandat 628.295 kb on - strandat 628.321 kb on + strandat 628.322 kb on - strandat 628.330 kb on + strandat 628.330 kb on + strandat 628.331 kb on - strandat 628.416 kb on + strandat 628.459 kb on - strandat 628.459 kb on - strandat 628.479 kb on - strandat 628.479 kb on - strandat 628.479 kb on - strandat 628.482 kb on + strandat 628.482 kb on + strandat 628.483 kb on - strandat 628.483 kb on - strandat 628.483 kb on - strandat 628.553 kb on + strand, within BPHYT_RS02800at 628.553 kb on + strand, within BPHYT_RS02800at 628.554 kb on - strand, within BPHYT_RS02800at 628.571 kb on + strand, within BPHYT_RS02800at 628.790 kb on + strand, within BPHYT_RS02800at 628.790 kb on + strand, within BPHYT_RS02800at 628.790 kb on + strand, within BPHYT_RS02800at 628.791 kb on - strand, within BPHYT_RS02800at 629.030 kb on + strand, within BPHYT_RS02800at 629.031 kb on - strand, within BPHYT_RS02800at 629.031 kb on - strand, within BPHYT_RS02800at 629.031 kb on - strand, within BPHYT_RS02800at 629.205 kb on + strandat 629.205 kb on + strandat 629.205 kb on + strandat 629.205 kb on + strandat 629.206 kb on - strandat 629.206 kb on - strandat 629.206 kb on - strandat 629.206 kb on - strandat 629.206 kb on - strandat 629.211 kb on + strandat 629.212 kb on - strandat 629.232 kb on + strandat 629.271 kb on + strand, within BPHYT_RS02805at 629.271 kb on + strand, within BPHYT_RS02805at 629.277 kb on + strand, within BPHYT_RS02805at 629.278 kb on - strand, within BPHYT_RS02805at 629.472 kb on + strand, within BPHYT_RS02805at 629.542 kb on - strand, within BPHYT_RS02805at 629.571 kb on + strand, within BPHYT_RS02805at 629.571 kb on + strand, within BPHYT_RS02805at 629.572 kb on - strand, within BPHYT_RS02805at 629.741 kb on + strand, within BPHYT_RS02805at 629.742 kb on - strand, within BPHYT_RS02805at 629.747 kb on + strand, within BPHYT_RS02805at 629.747 kb on + strand, within BPHYT_RS02805at 629.748 kb on - strand, within BPHYT_RS02805at 629.772 kb on + strandat 629.772 kb on + strand, within BPHYT_RS02805at 629.773 kb on - strand, within BPHYT_RS02805at 629.838 kb on + strandat 629.839 kb on - strandat 629.904 kb on + strandat 629.905 kb on - strandat 629.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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627,499 + BPHYT_RS02795 0.23 +1.0
627,611 - BPHYT_RS02795 0.35 -1.1
627,611 - BPHYT_RS02795 0.35 +0.0
627,612 + BPHYT_RS02795 0.35 +0.8
627,612 + BPHYT_RS02795 0.35 -0.2
627,612 + BPHYT_RS02795 0.35 +0.9
627,613 - BPHYT_RS02795 0.35 -0.3
627,613 - BPHYT_RS02795 0.35 +0.4
627,613 - BPHYT_RS02795 0.35 -0.1
627,952 - BPHYT_RS02795 0.70 -3.5
627,952 - BPHYT_RS02795 0.70 -0.7
628,129 - BPHYT_RS02795 0.88 +0.8
628,129 - BPHYT_RS02795 0.88 +0.5
628,294 + -1.5
628,295 - +0.5
628,321 + -3.2
628,322 - +1.6
628,330 + +0.2
628,330 + +2.1
628,331 - +0.4
628,416 + +1.2
628,459 - -2.4
628,459 - -0.8
628,479 - +0.1
628,479 - -1.4
628,479 - +0.7
628,482 + +0.1
628,482 + -1.5
628,483 - +0.2
628,483 - -0.2
628,483 - +1.2
628,553 + BPHYT_RS02800 0.12 -1.1
628,553 + BPHYT_RS02800 0.12 -0.1
628,554 - BPHYT_RS02800 0.12 -0.6
628,571 + BPHYT_RS02800 0.14 -0.5
628,790 + BPHYT_RS02800 0.45 -2.1
628,790 + BPHYT_RS02800 0.45 -0.5
628,790 + BPHYT_RS02800 0.45 +0.9
628,791 - BPHYT_RS02800 0.46 -0.2
629,030 + BPHYT_RS02800 0.80 -0.6
629,031 - BPHYT_RS02800 0.80 +0.2
629,031 - BPHYT_RS02800 0.80 -1.0
629,031 - BPHYT_RS02800 0.80 -2.8
629,205 + +0.3
629,205 + +0.8
629,205 + -0.6
629,205 + -0.4
629,206 - +0.5
629,206 - -0.1
629,206 - -0.1
629,206 - -2.0
629,206 - -0.5
629,211 + +0.6
629,212 - -0.2
629,232 + -0.9
629,271 + BPHYT_RS02805 0.12 +1.7
629,271 + BPHYT_RS02805 0.12 -1.4
629,277 + BPHYT_RS02805 0.13 -3.0
629,278 - BPHYT_RS02805 0.13 -0.5
629,472 + BPHYT_RS02805 0.43 -0.3
629,542 - BPHYT_RS02805 0.54 -2.3
629,571 + BPHYT_RS02805 0.58 +0.9
629,571 + BPHYT_RS02805 0.58 -0.3
629,572 - BPHYT_RS02805 0.58 -0.4
629,741 + BPHYT_RS02805 0.84 +0.3
629,742 - BPHYT_RS02805 0.85 -0.3
629,747 + BPHYT_RS02805 0.85 -2.5
629,747 + BPHYT_RS02805 0.85 -3.2
629,748 - BPHYT_RS02805 0.86 +0.1
629,772 + +2.7
629,772 + BPHYT_RS02805 0.89 -0.5
629,773 - BPHYT_RS02805 0.89 -0.3
629,838 + -0.6
629,839 - +0.0
629,904 + -1.2
629,905 - -1.4
629,917 + -0.4

Or see this region's nucleotide sequence