Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01815 and BPHYT_RS01820 are separated by 16 nucleotides BPHYT_RS01820 and BPHYT_RS01825 are separated by 371 nucleotides
BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706
_RS01815
BPHYT_RS01820: BPHYT_RS01820 - sugar ABC transporter ATP-binding protein, at 412,723 to 414,357
_RS01820
BPHYT_RS01825: BPHYT_RS01825 - sugar ABC transporter substrate-binding protein, at 414,729 to 415,748
_RS01825
Position (kb) 412
413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.793 kb on + strand at 411.841 kb on + strand, within BPHYT_RS01815 at 411.995 kb on - strand, within BPHYT_RS01815 at 412.037 kb on - strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.665 kb on + strand at 412.666 kb on - strand at 412.724 kb on + strand at 412.725 kb on - strand at 412.761 kb on + strand at 412.762 kb on - strand at 412.762 kb on - strand at 413.303 kb on + strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.323 kb on - strand, within BPHYT_RS01820 at 413.705 kb on + strand, within BPHYT_RS01820 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.063 kb on - strand, within BPHYT_RS01820 at 414.241 kb on + strand at 414.242 kb on - strand at 414.318 kb on + strand at 414.473 kb on + strand at 414.474 kb on - strand at 414.483 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.609 kb on - strand at 414.667 kb on - strand at 414.699 kb on + strand at 414.739 kb on + strand at 414.773 kb on - strand at 415.294 kb on + strand, within BPHYT_RS01825 at 415.294 kb on + strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 411,793 + +0.7 411,841 + BPHYT_RS01815 0.14 +0.5 411,995 - BPHYT_RS01815 0.30 +0.7 412,037 - BPHYT_RS01815 0.34 -1.5 412,137 + BPHYT_RS01815 0.44 -0.9 412,137 + BPHYT_RS01815 0.44 +0.7 412,665 + -0.3 412,666 - -0.4 412,724 + +0.0 412,725 - -2.0 412,761 + +0.5 412,762 - -0.5 412,762 - +0.9 413,303 + BPHYT_RS01820 0.35 +0.0 413,323 - BPHYT_RS01820 0.37 -0.1 413,323 - BPHYT_RS01820 0.37 -1.7 413,705 + BPHYT_RS01820 0.60 +0.4 414,063 - BPHYT_RS01820 0.82 -1.1 414,063 - BPHYT_RS01820 0.82 +0.5 414,241 + +1.0 414,242 - +0.9 414,318 + +0.6 414,473 + +0.5 414,474 - +0.2 414,483 - +0.6 414,609 - -0.4 414,609 - -1.9 414,609 - -0.6 414,667 - +0.1 414,699 + +0.5 414,739 + +2.1 414,773 - +0.9 415,294 + BPHYT_RS01825 0.55 +0.5 415,294 + BPHYT_RS01825 0.55 +0.8 415,295 - BPHYT_RS01825 0.55 +1.9 415,295 - BPHYT_RS01825 0.55 -0.6
Or see this region's nucleotide sequence