Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01810

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01800 and BPHYT_RS01810 are separated by 699 nucleotidesBPHYT_RS01810 and BPHYT_RS01815 are separated by 46 nucleotides BPHYT_RS01800: BPHYT_RS01800 - ferredoxin--NADP reductase, at 409,220 to 409,990 _RS01800 BPHYT_RS01810: BPHYT_RS01810 - sugar ABC transporter permease, at 410,690 to 411,649 _RS01810 BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706 _RS01815 Position (kb) 410 411 412Strain fitness (log2 ratio) -1 0 1 2 3at 410.033 kb on - strandat 410.210 kb on + strandat 410.211 kb on - strandat 410.381 kb on + strandat 410.568 kb on - strandat 410.793 kb on + strand, within BPHYT_RS01810at 411.040 kb on - strand, within BPHYT_RS01810at 411.319 kb on + strand, within BPHYT_RS01810at 411.417 kb on + strand, within BPHYT_RS01810at 411.541 kb on - strand, within BPHYT_RS01810at 411.541 kb on - strand, within BPHYT_RS01810at 411.565 kb on - strandat 411.602 kb on + strandat 411.793 kb on + strandat 411.841 kb on + strand, within BPHYT_RS01815at 411.995 kb on - strand, within BPHYT_RS01815at 412.037 kb on - strand, within BPHYT_RS01815at 412.137 kb on + strand, within BPHYT_RS01815at 412.137 kb on + strand, within BPHYT_RS01815

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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410,033 - -1.1
410,210 + -1.5
410,211 - +1.0
410,381 + +1.4
410,568 - -1.2
410,793 + BPHYT_RS01810 0.11 +1.6
411,040 - BPHYT_RS01810 0.36 -0.6
411,319 + BPHYT_RS01810 0.66 +3.0
411,417 + BPHYT_RS01810 0.76 -0.3
411,541 - BPHYT_RS01810 0.89 +0.2
411,541 - BPHYT_RS01810 0.89 +0.3
411,565 - -0.7
411,602 + +0.8
411,793 + +0.7
411,841 + BPHYT_RS01815 0.14 +0.5
411,995 - BPHYT_RS01815 0.30 +0.7
412,037 - BPHYT_RS01815 0.34 -1.5
412,137 + BPHYT_RS01815 0.44 -0.9
412,137 + BPHYT_RS01815 0.44 +0.7

Or see this region's nucleotide sequence