Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00285 and BPHYT_RS00290 overlap by 16 nucleotides BPHYT_RS00290 and BPHYT_RS00295 are separated by 8 nucleotides BPHYT_RS00295 and BPHYT_RS00300 are separated by 118 nucleotides BPHYT_RS00300 and BPHYT_RS00305 are separated by 20 nucleotides
BPHYT_RS00285: BPHYT_RS00285 - urease accessory protein UreG, at 72,638 to 73,252
_RS00285
BPHYT_RS00290: BPHYT_RS00290 - hypothetical protein, at 73,237 to 74,064
_RS00290
BPHYT_RS00295: BPHYT_RS00295 - hypothetical protein, at 74,073 to 74,495
_RS00295
BPHYT_RS00300: BPHYT_RS00300 - urease accessory protein UreF, at 74,614 to 75,306
_RS00300
BPHYT_RS00305: BPHYT_RS00305 - ABC transporter substrate-binding protein, at 75,327 to 76,892
_RS00305
Position (kb) 74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.097 kb on + strand, within BPHYT_RS00285 at 73.098 kb on - strand, within BPHYT_RS00285 at 73.098 kb on - strand, within BPHYT_RS00285 at 73.135 kb on - strand, within BPHYT_RS00285 at 73.240 kb on + strand at 73.241 kb on - strand at 73.384 kb on + strand, within BPHYT_RS00290 at 73.385 kb on - strand, within BPHYT_RS00290 at 73.463 kb on + strand, within BPHYT_RS00290 at 73.464 kb on - strand, within BPHYT_RS00290 at 73.697 kb on - strand, within BPHYT_RS00290 at 73.819 kb on + strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 74.063 kb on - strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.093 kb on - strand at 74.259 kb on + strand, within BPHYT_RS00295 at 74.259 kb on + strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.664 kb on - strand at 74.963 kb on + strand, within BPHYT_RS00300 at 74.974 kb on + strand, within BPHYT_RS00300 at 74.975 kb on - strand, within BPHYT_RS00300 at 75.344 kb on - strand at 75.421 kb on + strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 73,097 + BPHYT_RS00285 0.75 -0.0 73,097 + BPHYT_RS00285 0.75 -1.2 73,097 + BPHYT_RS00285 0.75 -0.5 73,098 - BPHYT_RS00285 0.75 +1.0 73,098 - BPHYT_RS00285 0.75 -1.2 73,135 - BPHYT_RS00285 0.81 +0.1 73,240 + -0.8 73,241 - +0.3 73,384 + BPHYT_RS00290 0.18 +0.9 73,385 - BPHYT_RS00290 0.18 +0.0 73,463 + BPHYT_RS00290 0.27 +0.4 73,464 - BPHYT_RS00290 0.27 +0.3 73,697 - BPHYT_RS00290 0.56 +0.2 73,819 + BPHYT_RS00290 0.70 -0.7 73,820 - BPHYT_RS00290 0.70 +1.5 73,820 - BPHYT_RS00290 0.70 +1.3 74,063 - +0.7 74,072 + -2.9 74,072 + +0.3 74,072 + -1.6 74,072 + +0.3 74,072 + +1.1 74,073 - +0.8 74,073 - -0.8 74,073 - -1.1 74,073 - -0.4 74,093 - -0.3 74,259 + BPHYT_RS00295 0.44 -2.3 74,259 + BPHYT_RS00295 0.44 -4.0 74,260 - BPHYT_RS00295 0.44 -1.3 74,260 - BPHYT_RS00295 0.44 +2.8 74,664 - -0.5 74,963 + BPHYT_RS00300 0.50 +0.3 74,974 + BPHYT_RS00300 0.52 +1.0 74,975 - BPHYT_RS00300 0.52 -0.1 75,344 - +0.4 75,421 + +0.5 75,422 - +0.4 75,422 - -1.9 75,422 - -3.2 75,425 - -0.3
Or see this region's nucleotide sequence