Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00110

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00105 and BPHYT_RS00110 overlap by 4 nucleotidesBPHYT_RS00110 and BPHYT_RS00115 are separated by 5 nucleotidesBPHYT_RS00115 and BPHYT_RS00120 are separated by 64 nucleotides BPHYT_RS00105: BPHYT_RS00105 - ethanolamine ammonia lyase large subunit, at 31,432 to 32,826 _RS00105 BPHYT_RS00110: BPHYT_RS00110 - ethanolamine ammonia-lyase small subunit, at 32,823 to 33,620 _RS00110 BPHYT_RS00115: BPHYT_RS00115 - acetaldehyde dehydrogenase, at 33,626 to 34,021 _RS00115 BPHYT_RS00120: BPHYT_RS00120 - aldehyde dehydrogenase, at 34,086 to 35,606 _RS00120 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.979 kb on - strand, within BPHYT_RS00105at 32.236 kb on + strand, within BPHYT_RS00105at 32.237 kb on - strand, within BPHYT_RS00105at 32.287 kb on + strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.360 kb on + strand, within BPHYT_RS00105at 32.361 kb on - strand, within BPHYT_RS00105at 32.368 kb on + strand, within BPHYT_RS00105at 32.434 kb on + strand, within BPHYT_RS00105at 32.441 kb on - strand, within BPHYT_RS00105at 32.598 kb on + strand, within BPHYT_RS00105at 32.644 kb on + strand, within BPHYT_RS00105at 32.644 kb on + strand, within BPHYT_RS00105at 32.907 kb on - strand, within BPHYT_RS00110at 33.393 kb on + strand, within BPHYT_RS00110at 33.492 kb on + strand, within BPHYT_RS00110at 33.618 kb on + strandat 33.710 kb on + strand, within BPHYT_RS00115at 33.813 kb on + strand, within BPHYT_RS00115at 34.112 kb on + strandat 34.114 kb on + strandat 34.114 kb on + strandat 34.115 kb on - strandat 34.115 kb on - strandat 34.232 kb on - strandat 34.325 kb on - strand, within BPHYT_RS00120at 34.332 kb on - strand, within BPHYT_RS00120at 34.456 kb on + strand, within BPHYT_RS00120at 34.457 kb on - strand, within BPHYT_RS00120at 34.457 kb on - strand, within BPHYT_RS00120at 34.544 kb on - strand, within BPHYT_RS00120at 34.544 kb on - strand, within BPHYT_RS00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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31,979 - BPHYT_RS00105 0.39 -1.7
32,236 + BPHYT_RS00105 0.58 +1.0
32,237 - BPHYT_RS00105 0.58 +0.6
32,287 + BPHYT_RS00105 0.61 +1.2
32,288 - BPHYT_RS00105 0.61 +0.8
32,288 - BPHYT_RS00105 0.61 +1.0
32,360 + BPHYT_RS00105 0.67 +0.3
32,361 - BPHYT_RS00105 0.67 +1.1
32,368 + BPHYT_RS00105 0.67 +0.7
32,434 + BPHYT_RS00105 0.72 +0.1
32,441 - BPHYT_RS00105 0.72 +0.1
32,598 + BPHYT_RS00105 0.84 +0.8
32,644 + BPHYT_RS00105 0.87 +0.4
32,644 + BPHYT_RS00105 0.87 +0.6
32,907 - BPHYT_RS00110 0.11 +1.3
33,393 + BPHYT_RS00110 0.71 +0.7
33,492 + BPHYT_RS00110 0.84 +0.7
33,618 + +0.7
33,710 + BPHYT_RS00115 0.21 +1.3
33,813 + BPHYT_RS00115 0.47 +0.5
34,112 + +0.4
34,114 + -1.5
34,114 + -0.7
34,115 - +0.7
34,115 - -0.2
34,232 - +0.5
34,325 - BPHYT_RS00120 0.16 +1.0
34,332 - BPHYT_RS00120 0.16 +0.4
34,456 + BPHYT_RS00120 0.24 +1.2
34,457 - BPHYT_RS00120 0.24 -1.0
34,457 - BPHYT_RS00120 0.24 +0.5
34,544 - BPHYT_RS00120 0.30 +0.4
34,544 - BPHYT_RS00120 0.30 -0.7

Or see this region's nucleotide sequence