Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00095 and BPHYT_RS00100 are separated by 280 nucleotides BPHYT_RS00100 and BPHYT_RS00105 are separated by 43 nucleotides
BPHYT_RS00095: BPHYT_RS00095 - AraC family transcriptional regulator, at 28,838 to 29,704
_RS00095
BPHYT_RS00100: BPHYT_RS00100 - ethanolamine permease, at 29,985 to 31,388
_RS00100
BPHYT_RS00105: BPHYT_RS00105 - ethanolamine ammonia lyase large subunit, at 31,432 to 32,826
_RS00105
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 28.997 kb on - strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.999 kb on - strand, within BPHYT_RS00095 at 29.245 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.280 kb on - strand, within BPHYT_RS00095 at 29.376 kb on + strand, within BPHYT_RS00095 at 29.527 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.560 kb on - strand, within BPHYT_RS00095 at 29.578 kb on - strand, within BPHYT_RS00095 at 29.640 kb on + strand at 29.640 kb on + strand at 29.641 kb on - strand at 29.690 kb on - strand at 29.744 kb on + strand at 29.784 kb on + strand at 29.835 kb on + strand at 30.118 kb on - strand at 30.180 kb on + strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.182 kb on + strand, within BPHYT_RS00100 at 30.221 kb on + strand, within BPHYT_RS00100 at 30.409 kb on - strand, within BPHYT_RS00100 at 30.826 kb on - strand, within BPHYT_RS00100 at 30.857 kb on + strand, within BPHYT_RS00100 at 30.857 kb on + strand, within BPHYT_RS00100 at 30.858 kb on - strand, within BPHYT_RS00100 at 31.047 kb on + strand, within BPHYT_RS00100 at 31.131 kb on + strand, within BPHYT_RS00100 at 31.132 kb on - strand, within BPHYT_RS00100 at 31.132 kb on - strand, within BPHYT_RS00100 at 31.133 kb on + strand, within BPHYT_RS00100 at 31.134 kb on - strand, within BPHYT_RS00100 at 31.439 kb on - strand at 31.768 kb on - strand, within BPHYT_RS00105 at 31.979 kb on - strand, within BPHYT_RS00105 at 32.236 kb on + strand, within BPHYT_RS00105 at 32.237 kb on - strand, within BPHYT_RS00105 at 32.287 kb on + strand, within BPHYT_RS00105 at 32.288 kb on - strand, within BPHYT_RS00105 at 32.288 kb on - strand, within BPHYT_RS00105 at 32.360 kb on + strand, within BPHYT_RS00105 at 32.361 kb on - strand, within BPHYT_RS00105 at 32.368 kb on + strand, within BPHYT_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 28,997 - BPHYT_RS00095 0.18 -0.2 28,998 + BPHYT_RS00095 0.18 +3.1 28,998 + BPHYT_RS00095 0.18 -1.8 28,999 - BPHYT_RS00095 0.19 +1.1 29,245 + BPHYT_RS00095 0.47 -1.6 29,247 + BPHYT_RS00095 0.47 +0.8 29,247 + BPHYT_RS00095 0.47 +1.5 29,247 + BPHYT_RS00095 0.47 -0.8 29,248 - BPHYT_RS00095 0.47 +0.3 29,248 - BPHYT_RS00095 0.47 -0.7 29,248 - BPHYT_RS00095 0.47 -0.2 29,248 - BPHYT_RS00095 0.47 +0.3 29,280 - BPHYT_RS00095 0.51 -0.9 29,376 + BPHYT_RS00095 0.62 +0.1 29,527 + BPHYT_RS00095 0.79 -1.6 29,559 + BPHYT_RS00095 0.83 -0.6 29,559 + BPHYT_RS00095 0.83 +1.5 29,560 - BPHYT_RS00095 0.83 -0.1 29,578 - BPHYT_RS00095 0.85 -0.2 29,640 + +0.2 29,640 + -0.3 29,641 - +0.4 29,690 - -2.2 29,744 + -2.0 29,784 + +1.4 29,835 + -1.2 30,118 - -3.3 30,180 + BPHYT_RS00100 0.14 +0.6 30,181 - BPHYT_RS00100 0.14 +0.1 30,181 - BPHYT_RS00100 0.14 +0.0 30,182 + BPHYT_RS00100 0.14 +1.2 30,221 + BPHYT_RS00100 0.17 +0.3 30,409 - BPHYT_RS00100 0.30 -0.3 30,826 - BPHYT_RS00100 0.60 +0.7 30,857 + BPHYT_RS00100 0.62 +0.0 30,857 + BPHYT_RS00100 0.62 +0.6 30,858 - BPHYT_RS00100 0.62 -0.6 31,047 + BPHYT_RS00100 0.76 +0.7 31,131 + BPHYT_RS00100 0.82 +1.4 31,132 - BPHYT_RS00100 0.82 +0.2 31,132 - BPHYT_RS00100 0.82 -0.6 31,133 + BPHYT_RS00100 0.82 -0.5 31,134 - BPHYT_RS00100 0.82 +0.4 31,439 - -0.0 31,768 - BPHYT_RS00105 0.24 +0.7 31,979 - BPHYT_RS00105 0.39 -1.7 32,236 + BPHYT_RS00105 0.58 +1.0 32,237 - BPHYT_RS00105 0.58 +0.6 32,287 + BPHYT_RS00105 0.61 +1.2 32,288 - BPHYT_RS00105 0.61 +0.8 32,288 - BPHYT_RS00105 0.61 +1.0 32,360 + BPHYT_RS00105 0.67 +0.3 32,361 - BPHYT_RS00105 0.67 +1.1 32,368 + BPHYT_RS00105 0.67 +0.7
Or see this region's nucleotide sequence