Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27645 and BWI76_RS27650 overlap by 9 nucleotides BWI76_RS27650 and BWI76_RS27655 are separated by 24 nucleotides BWI76_RS27655 and BWI76_RS27660 are separated by 260 nucleotides BWI76_RS27660 and BWI76_RS27665 overlap by 1 nucleotides
BWI76_RS27645: BWI76_RS27645 - ADP-ribose pyrophosphatase, at 5,736,375 to 5,736,929
_RS27645
BWI76_RS27650: BWI76_RS27650 - EamA family transporter, at 5,736,921 to 5,737,781
_RS27650
BWI76_RS27655: BWI76_RS27655 - lipoprotein NlpA, at 5,737,806 to 5,738,615
_RS27655
BWI76_RS27660: BWI76_RS27660 - hypothetical protein, at 5,738,876 to 5,739,346
_RS27660
BWI76_RS27665: BWI76_RS27665 - phosphatase, at 5,739,346 to 5,739,972
_RS27665
Position (kb) 5737
5738
5739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5736.840 kb on - strand, within BWI76_RS27645 at 5736.960 kb on - strand at 5737.103 kb on - strand, within BWI76_RS27650 at 5737.135 kb on - strand, within BWI76_RS27650 at 5737.247 kb on + strand, within BWI76_RS27650 at 5737.255 kb on - strand, within BWI76_RS27650 at 5737.423 kb on - strand, within BWI76_RS27650 at 5737.474 kb on + strand, within BWI76_RS27650 at 5737.555 kb on - strand, within BWI76_RS27650 at 5737.574 kb on - strand, within BWI76_RS27650 at 5737.596 kb on + strand, within BWI76_RS27650 at 5737.752 kb on - strand at 5737.752 kb on - strand at 5737.838 kb on - strand at 5737.879 kb on - strand at 5737.888 kb on - strand, within BWI76_RS27655 at 5738.147 kb on + strand, within BWI76_RS27655 at 5738.289 kb on + strand, within BWI76_RS27655 at 5738.296 kb on + strand, within BWI76_RS27655 at 5738.340 kb on - strand, within BWI76_RS27655 at 5738.443 kb on - strand, within BWI76_RS27655 at 5738.490 kb on + strand, within BWI76_RS27655 at 5738.503 kb on + strand, within BWI76_RS27655 at 5738.518 kb on + strand, within BWI76_RS27655 at 5738.526 kb on - strand, within BWI76_RS27655 at 5738.526 kb on - strand, within BWI76_RS27655 at 5738.539 kb on + strand at 5738.565 kb on + strand at 5738.675 kb on + strand at 5738.775 kb on - strand at 5738.800 kb on + strand at 5738.843 kb on + strand at 5738.844 kb on - strand at 5738.844 kb on - strand at 5738.896 kb on + strand at 5738.992 kb on + strand, within BWI76_RS27660 at 5739.125 kb on - strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.261 kb on - strand, within BWI76_RS27660 at 5739.319 kb on - strand at 5739.425 kb on + strand, within BWI76_RS27665 at 5739.428 kb on - strand, within BWI76_RS27665 at 5739.442 kb on + strand, within BWI76_RS27665 at 5739.452 kb on + strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand at 5739.484 kb on - strand, within BWI76_RS27665 at 5739.494 kb on - strand, within BWI76_RS27665 at 5739.541 kb on - strand, within BWI76_RS27665 at 5739.586 kb on + strand, within BWI76_RS27665 at 5739.591 kb on + strand, within BWI76_RS27665
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 5,736,840 - BWI76_RS27645 0.84 -0.1 5,736,960 - +1.2 5,737,103 - BWI76_RS27650 0.21 -0.3 5,737,135 - BWI76_RS27650 0.25 +0.9 5,737,247 + BWI76_RS27650 0.38 +1.5 5,737,255 - BWI76_RS27650 0.39 +1.1 5,737,423 - BWI76_RS27650 0.58 +0.4 5,737,474 + BWI76_RS27650 0.64 +0.4 5,737,555 - BWI76_RS27650 0.74 +1.4 5,737,574 - BWI76_RS27650 0.76 -0.4 5,737,596 + BWI76_RS27650 0.78 +1.0 5,737,752 - -3.0 5,737,752 - +0.8 5,737,838 - +1.1 5,737,879 - +0.4 5,737,888 - BWI76_RS27655 0.10 -0.4 5,738,147 + BWI76_RS27655 0.42 +0.7 5,738,289 + BWI76_RS27655 0.60 -0.0 5,738,296 + BWI76_RS27655 0.60 -1.1 5,738,340 - BWI76_RS27655 0.66 +0.3 5,738,443 - BWI76_RS27655 0.79 -0.1 5,738,490 + BWI76_RS27655 0.84 -0.2 5,738,503 + BWI76_RS27655 0.86 +0.4 5,738,518 + BWI76_RS27655 0.88 -3.0 5,738,526 - BWI76_RS27655 0.89 -1.2 5,738,526 - BWI76_RS27655 0.89 -1.8 5,738,539 + +0.1 5,738,565 + +0.2 5,738,675 + -0.7 5,738,775 - +0.6 5,738,800 + -0.8 5,738,843 + +0.4 5,738,844 - -1.8 5,738,844 - +0.9 5,738,896 + +0.2 5,738,992 + BWI76_RS27660 0.25 -1.1 5,739,125 - BWI76_RS27660 0.53 -2.5 5,739,228 + BWI76_RS27660 0.75 -0.6 5,739,228 + BWI76_RS27660 0.75 -1.4 5,739,228 + BWI76_RS27660 0.75 +2.5 5,739,228 + BWI76_RS27660 0.75 -1.6 5,739,236 - BWI76_RS27660 0.76 +2.1 5,739,236 - BWI76_RS27660 0.76 +0.7 5,739,236 - BWI76_RS27660 0.76 -0.3 5,739,236 - BWI76_RS27660 0.76 -0.2 5,739,261 - BWI76_RS27660 0.82 -1.4 5,739,319 - +1.2 5,739,425 + BWI76_RS27665 0.13 -2.0 5,739,428 - BWI76_RS27665 0.13 -2.9 5,739,442 + BWI76_RS27665 0.15 -0.1 5,739,452 + BWI76_RS27665 0.17 +0.8 5,739,460 - BWI76_RS27665 0.18 +0.1 5,739,460 - BWI76_RS27665 0.18 -0.3 5,739,460 - +0.2 5,739,484 - BWI76_RS27665 0.22 +1.3 5,739,494 - BWI76_RS27665 0.24 +0.1 5,739,541 - BWI76_RS27665 0.31 -2.5 5,739,586 + BWI76_RS27665 0.38 -0.8 5,739,591 + BWI76_RS27665 0.39 -0.4
Or see this region's nucleotide sequence