Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26260 and BWI76_RS26265 overlap by 26 nucleotides BWI76_RS26265 and BWI76_RS26270 are separated by 42 nucleotides BWI76_RS26270 and BWI76_RS26275 are separated by 50 nucleotides BWI76_RS26275 and BWI76_RS26280 are separated by 121 nucleotides BWI76_RS26280 and BWI76_RS26285 are separated by 23 nucleotides
BWI76_RS26260: BWI76_RS26260 - hypothetical protein, at 5,436,830 to 5,437,468
_RS26260
BWI76_RS26265: BWI76_RS26265 - hypothetical protein, at 5,437,443 to 5,437,673
_RS26265
BWI76_RS26270: BWI76_RS26270 - N-acetyltransferase, at 5,437,716 to 5,438,207
_RS26270
BWI76_RS26275: BWI76_RS26275 - gamma-glutamyltransferase, at 5,438,258 to 5,440,000
_RS26275
BWI76_RS26280: BWI76_RS26280 - hypothetical protein, at 5,440,122 to 5,440,442
_RS26280
BWI76_RS26285: BWI76_RS26285 - glycerophosphodiester phosphodiesterase, at 5,440,466 to 5,441,206
_RS26285
Position (kb) 5438
5439
5440
5441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5437.335 kb on - strand, within BWI76_RS26260 at 5437.736 kb on - strand at 5437.875 kb on - strand, within BWI76_RS26270 at 5437.894 kb on + strand, within BWI76_RS26270 at 5437.929 kb on - strand, within BWI76_RS26270 at 5437.936 kb on - strand, within BWI76_RS26270 at 5437.990 kb on + strand, within BWI76_RS26270 at 5438.044 kb on - strand, within BWI76_RS26270 at 5438.074 kb on + strand, within BWI76_RS26270 at 5438.182 kb on + strand at 5438.212 kb on + strand at 5438.227 kb on - strand at 5438.248 kb on - strand at 5438.256 kb on + strand at 5438.264 kb on - strand at 5438.264 kb on - strand at 5438.264 kb on - strand at 5438.309 kb on - strand at 5438.309 kb on - strand at 5438.337 kb on - strand at 5438.763 kb on + strand, within BWI76_RS26275 at 5438.773 kb on + strand, within BWI76_RS26275 at 5438.773 kb on + strand, within BWI76_RS26275 at 5439.138 kb on - strand, within BWI76_RS26275 at 5439.140 kb on + strand, within BWI76_RS26275 at 5439.140 kb on + strand, within BWI76_RS26275 at 5439.148 kb on - strand, within BWI76_RS26275 at 5439.148 kb on - strand, within BWI76_RS26275 at 5439.212 kb on + strand, within BWI76_RS26275 at 5439.231 kb on + strand, within BWI76_RS26275 at 5439.267 kb on + strand, within BWI76_RS26275 at 5439.417 kb on - strand, within BWI76_RS26275 at 5439.503 kb on + strand, within BWI76_RS26275 at 5439.540 kb on - strand, within BWI76_RS26275 at 5439.572 kb on - strand, within BWI76_RS26275 at 5439.678 kb on + strand, within BWI76_RS26275 at 5439.686 kb on - strand, within BWI76_RS26275 at 5439.742 kb on + strand, within BWI76_RS26275 at 5439.854 kb on + strand at 5439.897 kb on + strand at 5439.897 kb on + strand at 5439.905 kb on - strand at 5439.942 kb on - strand at 5439.963 kb on + strand at 5440.096 kb on - strand at 5440.112 kb on + strand at 5440.115 kb on - strand at 5440.178 kb on + strand, within BWI76_RS26280 at 5440.197 kb on - strand, within BWI76_RS26280 at 5440.218 kb on - strand, within BWI76_RS26280 at 5440.293 kb on + strand, within BWI76_RS26280 at 5440.293 kb on + strand, within BWI76_RS26280 at 5440.601 kb on - strand, within BWI76_RS26285 at 5440.635 kb on - strand, within BWI76_RS26285 at 5440.635 kb on - strand, within BWI76_RS26285 at 5440.698 kb on + strand, within BWI76_RS26285 at 5440.943 kb on - strand, within BWI76_RS26285
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 5,437,335 - BWI76_RS26260 0.79 +0.4 5,437,736 - -0.9 5,437,875 - BWI76_RS26270 0.32 -2.6 5,437,894 + BWI76_RS26270 0.36 -1.7 5,437,929 - BWI76_RS26270 0.43 -0.5 5,437,936 - BWI76_RS26270 0.45 +1.3 5,437,990 + BWI76_RS26270 0.56 -1.0 5,438,044 - BWI76_RS26270 0.67 -1.0 5,438,074 + BWI76_RS26270 0.73 +0.3 5,438,182 + -0.4 5,438,212 + -0.3 5,438,227 - +0.3 5,438,248 - -2.3 5,438,256 + -1.7 5,438,264 - +0.6 5,438,264 - -1.0 5,438,264 - +0.2 5,438,309 - +0.6 5,438,309 - -2.0 5,438,337 - -0.0 5,438,763 + BWI76_RS26275 0.29 -1.3 5,438,773 + BWI76_RS26275 0.30 -1.1 5,438,773 + BWI76_RS26275 0.30 -0.1 5,439,138 - BWI76_RS26275 0.50 +3.4 5,439,140 + BWI76_RS26275 0.51 -2.9 5,439,140 + BWI76_RS26275 0.51 +0.2 5,439,148 - BWI76_RS26275 0.51 -1.9 5,439,148 - BWI76_RS26275 0.51 +0.7 5,439,212 + BWI76_RS26275 0.55 -4.0 5,439,231 + BWI76_RS26275 0.56 -1.7 5,439,267 + BWI76_RS26275 0.58 +0.1 5,439,417 - BWI76_RS26275 0.66 -0.0 5,439,503 + BWI76_RS26275 0.71 -0.8 5,439,540 - BWI76_RS26275 0.74 -1.3 5,439,572 - BWI76_RS26275 0.75 +0.7 5,439,678 + BWI76_RS26275 0.81 +0.4 5,439,686 - BWI76_RS26275 0.82 +0.2 5,439,742 + BWI76_RS26275 0.85 +1.0 5,439,854 + +0.5 5,439,897 + +0.2 5,439,897 + +0.9 5,439,905 - +1.1 5,439,942 - +1.1 5,439,963 + +2.1 5,440,096 - -2.5 5,440,112 + -0.4 5,440,115 - +1.1 5,440,178 + BWI76_RS26280 0.17 +0.3 5,440,197 - BWI76_RS26280 0.23 +1.5 5,440,218 - BWI76_RS26280 0.30 -3.0 5,440,293 + BWI76_RS26280 0.53 -0.3 5,440,293 + BWI76_RS26280 0.53 +1.6 5,440,601 - BWI76_RS26285 0.18 +0.7 5,440,635 - BWI76_RS26285 0.23 +1.6 5,440,635 - BWI76_RS26285 0.23 +1.9 5,440,698 + BWI76_RS26285 0.31 +0.7 5,440,943 - BWI76_RS26285 0.64 +1.6
Or see this region's nucleotide sequence