Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24195 and BWI76_RS24200 are separated by 163 nucleotides BWI76_RS24200 and BWI76_RS24205 are separated by 102 nucleotides
BWI76_RS24195: BWI76_RS24195 - anion transporter, at 5,043,561 to 5,044,949
_RS24195
BWI76_RS24200: BWI76_RS24200 - hypothetical protein, at 5,045,113 to 5,045,392
_RS24200
BWI76_RS24205: BWI76_RS24205 - cystathionine beta-synthase, at 5,045,495 to 5,046,865
_RS24205
Position (kb) 5045
5046 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5044.131 kb on - strand, within BWI76_RS24195 at 5044.147 kb on + strand, within BWI76_RS24195 at 5044.147 kb on + strand at 5044.170 kb on + strand, within BWI76_RS24195 at 5044.173 kb on - strand, within BWI76_RS24195 at 5044.190 kb on + strand, within BWI76_RS24195 at 5044.210 kb on - strand, within BWI76_RS24195 at 5044.213 kb on + strand, within BWI76_RS24195 at 5044.220 kb on + strand, within BWI76_RS24195 at 5044.220 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195 at 5044.266 kb on - strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.314 kb on - strand, within BWI76_RS24195 at 5044.316 kb on + strand, within BWI76_RS24195 at 5044.326 kb on + strand, within BWI76_RS24195 at 5044.404 kb on - strand, within BWI76_RS24195 at 5044.417 kb on - strand, within BWI76_RS24195 at 5044.421 kb on - strand, within BWI76_RS24195 at 5044.459 kb on + strand, within BWI76_RS24195 at 5044.464 kb on - strand, within BWI76_RS24195 at 5044.466 kb on - strand, within BWI76_RS24195 at 5044.518 kb on - strand, within BWI76_RS24195 at 5044.557 kb on + strand at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.597 kb on + strand, within BWI76_RS24195 at 5044.597 kb on + strand, within BWI76_RS24195 at 5044.597 kb on + strand at 5044.634 kb on + strand, within BWI76_RS24195 at 5044.634 kb on + strand, within BWI76_RS24195 at 5044.642 kb on - strand, within BWI76_RS24195 at 5044.688 kb on - strand, within BWI76_RS24195 at 5044.696 kb on + strand, within BWI76_RS24195 at 5044.696 kb on + strand, within BWI76_RS24195 at 5044.705 kb on + strand, within BWI76_RS24195 at 5044.715 kb on + strand, within BWI76_RS24195 at 5044.720 kb on + strand, within BWI76_RS24195 at 5044.728 kb on - strand, within BWI76_RS24195 at 5044.728 kb on - strand, within BWI76_RS24195 at 5044.733 kb on + strand at 5044.773 kb on + strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.795 kb on + strand at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.799 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.808 kb on - strand, within BWI76_RS24195 at 5044.808 kb on - strand at 5044.808 kb on - strand, within BWI76_RS24195 at 5044.817 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.824 kb on - strand at 5044.825 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.832 kb on + strand at 5044.837 kb on + strand at 5044.838 kb on - strand at 5044.842 kb on + strand at 5044.845 kb on - strand at 5044.845 kb on - strand at 5044.845 kb on - strand at 5044.854 kb on + strand at 5044.862 kb on - strand at 5044.911 kb on + strand at 5044.922 kb on + strand at 5044.930 kb on - strand at 5044.958 kb on + strand at 5044.966 kb on - strand at 5044.966 kb on - strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.982 kb on + strand at 5044.998 kb on - strand at 5045.004 kb on + strand at 5045.177 kb on - strand, within BWI76_RS24200 at 5045.179 kb on - strand, within BWI76_RS24200 at 5045.238 kb on - strand, within BWI76_RS24200 at 5045.252 kb on + strand, within BWI76_RS24200 at 5045.274 kb on + strand, within BWI76_RS24200 at 5045.274 kb on + strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.364 kb on + strand at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.365 kb on + strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.374 kb on + strand at 5045.416 kb on - strand at 5045.419 kb on - strand at 5045.493 kb on - strand at 5045.528 kb on + strand at 5045.528 kb on - strand at 5045.529 kb on + strand at 5045.557 kb on + strand at 5045.557 kb on + strand at 5045.557 kb on + strand at 5045.565 kb on - strand at 5045.616 kb on + strand at 5045.646 kb on - strand, within BWI76_RS24205 at 5045.646 kb on - strand, within BWI76_RS24205 at 5045.655 kb on - strand, within BWI76_RS24205 at 5045.657 kb on - strand, within BWI76_RS24205 at 5045.771 kb on - strand, within BWI76_RS24205 at 5045.841 kb on + strand, within BWI76_RS24205 at 5045.874 kb on + strand, within BWI76_RS24205 at 5046.084 kb on - strand, within BWI76_RS24205 at 5046.289 kb on + strand, within BWI76_RS24205 at 5046.307 kb on + strand, within BWI76_RS24205 at 5046.328 kb on + strand, within BWI76_RS24205
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 5,044,131 - BWI76_RS24195 0.41 -1.2 5,044,147 + BWI76_RS24195 0.42 +0.2 5,044,147 + +1.2 5,044,170 + BWI76_RS24195 0.44 -2.4 5,044,173 - BWI76_RS24195 0.44 -3.2 5,044,190 + BWI76_RS24195 0.45 -0.4 5,044,210 - BWI76_RS24195 0.47 +0.3 5,044,213 + BWI76_RS24195 0.47 +0.5 5,044,220 + BWI76_RS24195 0.47 +0.9 5,044,220 - BWI76_RS24195 0.47 -1.4 5,044,228 - BWI76_RS24195 0.48 +2.6 5,044,228 - BWI76_RS24195 0.48 -2.2 5,044,266 - BWI76_RS24195 0.51 +0.2 5,044,306 + BWI76_RS24195 0.54 -1.9 5,044,306 + BWI76_RS24195 0.54 +0.5 5,044,306 + BWI76_RS24195 0.54 +1.2 5,044,306 + BWI76_RS24195 0.54 +0.3 5,044,314 - BWI76_RS24195 0.54 +1.1 5,044,316 + BWI76_RS24195 0.54 -2.5 5,044,326 + BWI76_RS24195 0.55 -1.5 5,044,404 - BWI76_RS24195 0.61 -0.7 5,044,417 - BWI76_RS24195 0.62 +1.2 5,044,421 - BWI76_RS24195 0.62 +1.1 5,044,459 + BWI76_RS24195 0.65 +5.4 5,044,464 - BWI76_RS24195 0.65 +0.2 5,044,466 - BWI76_RS24195 0.65 -1.2 5,044,518 - BWI76_RS24195 0.69 -3.8 5,044,557 + +1.2 5,044,584 - BWI76_RS24195 0.74 +0.2 5,044,584 - BWI76_RS24195 0.74 -1.9 5,044,584 - BWI76_RS24195 0.74 -1.9 5,044,597 + BWI76_RS24195 0.75 +1.0 5,044,597 + BWI76_RS24195 0.75 -2.2 5,044,597 + -1.9 5,044,634 + BWI76_RS24195 0.77 +1.1 5,044,634 + BWI76_RS24195 0.77 +1.2 5,044,642 - BWI76_RS24195 0.78 +1.4 5,044,688 - BWI76_RS24195 0.81 +0.7 5,044,696 + BWI76_RS24195 0.82 +0.2 5,044,696 + BWI76_RS24195 0.82 -0.4 5,044,705 + BWI76_RS24195 0.82 +1.2 5,044,715 + BWI76_RS24195 0.83 -1.1 5,044,720 + BWI76_RS24195 0.83 +1.2 5,044,728 - BWI76_RS24195 0.84 -3.4 5,044,728 - BWI76_RS24195 0.84 +0.2 5,044,733 + +1.2 5,044,773 + BWI76_RS24195 0.87 +1.9 5,044,781 - BWI76_RS24195 0.88 +0.2 5,044,781 - BWI76_RS24195 0.88 -1.4 5,044,781 - BWI76_RS24195 0.88 -3.9 5,044,795 + BWI76_RS24195 0.89 +2.2 5,044,795 + -0.4 5,044,795 + BWI76_RS24195 0.89 -0.3 5,044,795 + BWI76_RS24195 0.89 +2.5 5,044,799 + BWI76_RS24195 0.89 +0.2 5,044,800 + BWI76_RS24195 0.89 -2.2 5,044,800 + BWI76_RS24195 0.89 -2.9 5,044,800 + BWI76_RS24195 0.89 +0.3 5,044,808 - BWI76_RS24195 0.90 -2.9 5,044,808 - +1.2 5,044,808 - BWI76_RS24195 0.90 -1.4 5,044,817 + -0.5 5,044,823 + +0.6 5,044,823 + -0.4 5,044,823 + -2.1 5,044,823 + -1.4 5,044,823 + +0.2 5,044,823 + +1.2 5,044,823 + -0.9 5,044,823 + +1.2 5,044,824 - -0.5 5,044,825 + +0.2 5,044,830 + -2.4 5,044,830 + -0.4 5,044,830 + +1.2 5,044,830 + -1.1 5,044,831 - -0.4 5,044,831 - -0.7 5,044,831 - -1.8 5,044,831 - -0.7 5,044,831 - +0.2 5,044,831 - -0.4 5,044,831 - +0.2 5,044,831 - +0.2 5,044,832 + -0.5 5,044,837 + -1.9 5,044,838 - -0.4 5,044,842 + +2.3 5,044,845 - -2.5 5,044,845 - -0.6 5,044,845 - +0.9 5,044,854 + +1.3 5,044,862 - -2.4 5,044,911 + -2.1 5,044,922 + +0.2 5,044,930 - +1.2 5,044,958 + -2.2 5,044,966 - +1.2 5,044,966 - -1.1 5,044,968 + +0.1 5,044,968 + +0.6 5,044,968 + -1.6 5,044,968 + -0.8 5,044,968 + -0.5 5,044,968 + +1.1 5,044,968 + -1.4 5,044,968 + +2.1 5,044,968 + +1.7 5,044,968 + -0.4 5,044,968 + -1.6 5,044,976 - -1.1 5,044,976 - -0.4 5,044,976 - +0.2 5,044,976 - +1.2 5,044,976 - -3.7 5,044,976 - -0.4 5,044,976 - +0.2 5,044,976 - +1.2 5,044,976 - -2.7 5,044,982 + +1.2 5,044,998 - +2.0 5,045,004 + -4.3 5,045,177 - BWI76_RS24200 0.23 +2.7 5,045,179 - BWI76_RS24200 0.24 +1.1 5,045,238 - BWI76_RS24200 0.45 -2.2 5,045,252 + BWI76_RS24200 0.50 -3.1 5,045,274 + BWI76_RS24200 0.57 +2.3 5,045,274 + BWI76_RS24200 0.57 -2.2 5,045,282 - BWI76_RS24200 0.60 -1.9 5,045,282 - BWI76_RS24200 0.60 +0.4 5,045,282 - BWI76_RS24200 0.60 +0.4 5,045,364 + BWI76_RS24200 0.90 +1.2 5,045,364 + BWI76_RS24200 0.90 +0.3 5,045,364 + +2.2 5,045,364 + BWI76_RS24200 0.90 -2.2 5,045,365 + -3.2 5,045,372 - -0.2 5,045,372 - -1.6 5,045,372 - -0.2 5,045,372 - -1.6 5,045,372 - -2.1 5,045,372 - -0.4 5,045,374 + +1.2 5,045,416 - -1.1 5,045,419 - +1.6 5,045,493 - -0.8 5,045,528 + -1.9 5,045,528 - -0.4 5,045,529 + +0.3 5,045,557 + -0.2 5,045,557 + -2.5 5,045,557 + +2.5 5,045,565 - +1.3 5,045,616 + +1.2 5,045,646 - BWI76_RS24205 0.11 +0.7 5,045,646 - BWI76_RS24205 0.11 +0.3 5,045,655 - BWI76_RS24205 0.12 -3.5 5,045,657 - BWI76_RS24205 0.12 -1.4 5,045,771 - BWI76_RS24205 0.20 +0.0 5,045,841 + BWI76_RS24205 0.25 +0.0 5,045,874 + BWI76_RS24205 0.28 -0.1 5,046,084 - BWI76_RS24205 0.43 -1.0 5,046,289 + BWI76_RS24205 0.58 +1.3 5,046,307 + BWI76_RS24205 0.59 -0.6 5,046,328 + BWI76_RS24205 0.61 -2.2
Or see this region's nucleotide sequence