Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23895 and BWI76_RS23900 are separated by 28 nucleotides BWI76_RS23900 and BWI76_RS23905 are separated by 159 nucleotides BWI76_RS23905 and BWI76_RS23915 are separated by 327 nucleotides
BWI76_RS23895: BWI76_RS23895 - Xaa-Pro aminopeptidase, at 4,987,804 to 4,989,120
_RS23895
BWI76_RS23900: BWI76_RS23900 - hypothetical protein, at 4,989,149 to 4,989,733
_RS23900
BWI76_RS23905: BWI76_RS23905 - Z-ring-associated protein, at 4,989,893 to 4,990,222
_RS23905
BWI76_RS23915: BWI76_RS23915 - 5-formyltetrahydrofolate cyclo-ligase, at 4,990,550 to 4,991,146
_RS23915
Position (kb) 4989
4990 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4988.406 kb on - strand, within BWI76_RS23895 at 4988.824 kb on - strand, within BWI76_RS23895 at 4989.135 kb on - strand at 4989.254 kb on - strand, within BWI76_RS23900 at 4989.317 kb on - strand, within BWI76_RS23900 at 4989.661 kb on - strand, within BWI76_RS23900 at 4989.726 kb on - strand at 4989.726 kb on - strand at 4989.780 kb on - strand at 4989.815 kb on - strand at 4989.828 kb on + strand at 4989.964 kb on - strand, within BWI76_RS23905 at 4989.968 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.976 kb on - strand, within BWI76_RS23905 at 4990.133 kb on - strand, within BWI76_RS23905 at 4990.154 kb on - strand, within BWI76_RS23905 at 4990.158 kb on + strand, within BWI76_RS23905 at 4990.239 kb on + strand at 4990.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 4,988,406 - BWI76_RS23895 0.46 +1.2 4,988,824 - BWI76_RS23895 0.77 +1.6 4,989,135 - +1.2 4,989,254 - BWI76_RS23900 0.18 -1.2 4,989,317 - BWI76_RS23900 0.29 +0.4 4,989,661 - BWI76_RS23900 0.88 -0.8 4,989,726 - +0.8 4,989,726 - -3.4 4,989,780 - +0.4 4,989,815 - +1.4 4,989,828 + -3.6 4,989,964 - BWI76_RS23905 0.22 +0.7 4,989,968 + BWI76_RS23905 0.23 -0.2 4,989,969 + BWI76_RS23905 0.23 +0.1 4,989,969 + BWI76_RS23905 0.23 -0.0 4,989,976 - BWI76_RS23905 0.25 +0.5 4,990,133 - BWI76_RS23905 0.73 -2.6 4,990,154 - BWI76_RS23905 0.79 +1.1 4,990,158 + BWI76_RS23905 0.80 -1.7 4,990,239 + -1.5 4,990,247 - +0.9
Or see this region's nucleotide sequence