Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23515 and BWI76_RS23520 are separated by 382 nucleotides BWI76_RS23520 and BWI76_RS23525 are separated by 394 nucleotides BWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotides BWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotides
BWI76_RS23515: BWI76_RS23515 - antibiotic biosynthesis monooxygenase, at 4,906,235 to 4,906,552
_RS23515
BWI76_RS23520: BWI76_RS23520 - hypothetical protein, at 4,906,935 to 4,907,144
_RS23520
BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429
_RS23525
BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016
_RS23530
BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561
_RS23535
Position (kb) 4907
4908
4909 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4906.612 kb on - strand at 4906.802 kb on + strand at 4907.013 kb on - strand, within BWI76_RS23520 at 4907.133 kb on - strand at 4907.173 kb on - strand at 4907.173 kb on - strand at 4907.380 kb on - strand at 4907.380 kb on - strand at 4907.394 kb on - strand at 4907.407 kb on + strand at 4907.422 kb on - strand at 4907.439 kb on - strand at 4907.526 kb on + strand at 4907.534 kb on - strand at 4907.597 kb on + strand at 4907.753 kb on + strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.796 kb on - strand, within BWI76_RS23525 at 4907.819 kb on - strand, within BWI76_RS23525 at 4907.999 kb on - strand, within BWI76_RS23525 at 4908.128 kb on + strand, within BWI76_RS23525 at 4908.193 kb on - strand, within BWI76_RS23525 at 4908.522 kb on + strand at 4908.525 kb on - strand at 4908.527 kb on + strand at 4908.630 kb on - strand, within BWI76_RS23530 at 4908.742 kb on - strand, within BWI76_RS23530 at 4908.880 kb on + strand, within BWI76_RS23530 at 4908.987 kb on + strand at 4909.019 kb on - strand at 4909.091 kb on + strand at 4909.099 kb on - strand at 4909.161 kb on - strand, within BWI76_RS23535 at 4909.193 kb on - strand, within BWI76_RS23535 at 4909.247 kb on - strand, within BWI76_RS23535
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 4,906,612 - -0.2 4,906,802 + -2.6 4,907,013 - BWI76_RS23520 0.37 +0.6 4,907,133 - +0.8 4,907,173 - -0.3 4,907,173 - -1.8 4,907,380 - -1.4 4,907,380 - -1.5 4,907,394 - +1.2 4,907,407 + -1.1 4,907,422 - +1.0 4,907,439 - -2.0 4,907,526 + -2.1 4,907,534 - -0.9 4,907,597 + -2.9 4,907,753 + BWI76_RS23525 0.24 -4.2 4,907,792 - BWI76_RS23525 0.28 -0.9 4,907,792 - BWI76_RS23525 0.28 +0.8 4,907,796 - BWI76_RS23525 0.29 -0.8 4,907,819 - BWI76_RS23525 0.31 +1.0 4,907,999 - BWI76_RS23525 0.52 -2.8 4,908,128 + BWI76_RS23525 0.66 -3.7 4,908,193 - BWI76_RS23525 0.73 -0.1 4,908,522 + -1.1 4,908,525 - -1.1 4,908,527 + -3.0 4,908,630 - BWI76_RS23530 0.24 -0.5 4,908,742 - BWI76_RS23530 0.46 -0.6 4,908,880 + BWI76_RS23530 0.73 +4.8 4,908,987 + -0.4 4,909,019 - -3.6 4,909,091 + +1.5 4,909,099 - -1.1 4,909,161 - BWI76_RS23535 0.13 -0.1 4,909,193 - BWI76_RS23535 0.20 +0.1 4,909,247 - BWI76_RS23535 0.32 -0.8
Or see this region's nucleotide sequence