Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20135

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20130 and BWI76_RS20135 are separated by 6 nucleotidesBWI76_RS20135 and BWI76_RS20140 are separated by 157 nucleotides BWI76_RS20130: BWI76_RS20130 - NADH-quinone oxidoreductase subunit N, at 4,216,987 to 4,218,444 _RS20130 BWI76_RS20135: BWI76_RS20135 - NADH-quinone oxidoreductase subunit M, at 4,218,451 to 4,219,980 _RS20135 BWI76_RS20140: BWI76_RS20140 - NADH-quinone oxidoreductase subunit L, at 4,220,138 to 4,221,979 _RS20140 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4217.909 kb on + strand, within BWI76_RS20130at 4218.271 kb on + strand, within BWI76_RS20130at 4218.731 kb on + strand, within BWI76_RS20135at 4219.060 kb on + strand, within BWI76_RS20135at 4219.526 kb on + strand, within BWI76_RS20135at 4219.829 kb on - strandat 4220.091 kb on - strandat 4220.202 kb on - strandat 4220.369 kb on - strand, within BWI76_RS20140at 4220.380 kb on - strand, within BWI76_RS20140at 4220.702 kb on - strand, within BWI76_RS20140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
remove
4,217,909 + BWI76_RS20130 0.63 -3.6
4,218,271 + BWI76_RS20130 0.88 -4.4
4,218,731 + BWI76_RS20135 0.18 -1.1
4,219,060 + BWI76_RS20135 0.40 -4.3
4,219,526 + BWI76_RS20135 0.70 -2.7
4,219,829 - -3.4
4,220,091 - -3.0
4,220,202 - -3.8
4,220,369 - BWI76_RS20140 0.13 -1.4
4,220,380 - BWI76_RS20140 0.13 -3.6
4,220,702 - BWI76_RS20140 0.31 -2.5

Or see this region's nucleotide sequence