Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19730

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19725 and BWI76_RS19730 are separated by 16 nucleotidesBWI76_RS19730 and BWI76_RS19735 are separated by 0 nucleotides BWI76_RS19725: BWI76_RS19725 - PTS fructose transporter subunit EIIBC, at 4,122,963 to 4,124,639 _RS19725 BWI76_RS19730: BWI76_RS19730 - 1-phosphofructokinase, at 4,124,656 to 4,125,594 _RS19730 BWI76_RS19735: BWI76_RS19735 - bifunctional PTS fructose transporter subunit IIA/HPr protein, at 4,125,595 to 4,126,725 _RS19735 Position (kb) 4124 4125 4126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4123.932 kb on + strand, within BWI76_RS19725at 4124.177 kb on + strand, within BWI76_RS19725at 4124.185 kb on - strand, within BWI76_RS19725at 4124.499 kb on - strandat 4124.598 kb on + strandat 4124.856 kb on + strand, within BWI76_RS19730at 4125.000 kb on + strand, within BWI76_RS19730at 4125.011 kb on + strand, within BWI76_RS19730at 4125.207 kb on - strand, within BWI76_RS19730at 4125.659 kb on + strandat 4125.667 kb on - strandat 4125.861 kb on - strand, within BWI76_RS19735at 4126.059 kb on - strand, within BWI76_RS19735at 4126.211 kb on + strand, within BWI76_RS19735at 4126.331 kb on - strand, within BWI76_RS19735at 4126.343 kb on + strand, within BWI76_RS19735at 4126.351 kb on - strand, within BWI76_RS19735at 4126.392 kb on - strand, within BWI76_RS19735at 4126.530 kb on + strand, within BWI76_RS19735

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
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4,123,932 + BWI76_RS19725 0.58 -0.6
4,124,177 + BWI76_RS19725 0.72 -1.1
4,124,185 - BWI76_RS19725 0.73 +0.4
4,124,499 - +0.4
4,124,598 + -0.3
4,124,856 + BWI76_RS19730 0.21 -0.3
4,125,000 + BWI76_RS19730 0.37 -3.8
4,125,011 + BWI76_RS19730 0.38 -2.5
4,125,207 - BWI76_RS19730 0.59 -1.5
4,125,659 + +1.5
4,125,667 - -2.3
4,125,861 - BWI76_RS19735 0.24 -2.3
4,126,059 - BWI76_RS19735 0.41 +1.2
4,126,211 + BWI76_RS19735 0.54 -0.2
4,126,331 - BWI76_RS19735 0.65 +0.0
4,126,343 + BWI76_RS19735 0.66 -2.9
4,126,351 - BWI76_RS19735 0.67 +0.5
4,126,392 - BWI76_RS19735 0.70 -0.3
4,126,530 + BWI76_RS19735 0.83 -1.6

Or see this region's nucleotide sequence