Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16615

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
3,438,840	-		BWI76_RS16605	0.32	-1.4
3,438,853	-		BWI76_RS16605	0.34	-4.3
3,438,863	-		BWI76_RS16605	0.36	-2.1
3,438,870	-		BWI76_RS16605	0.38	-1.2
3,438,870	-		BWI76_RS16605	0.38	-1.4
3,438,870	-		BWI76_RS16605	0.38	+0.4
3,438,874	-		BWI76_RS16605	0.38	-3.6
3,438,885	-		BWI76_RS16605	0.41	-4.3
3,438,885	-		BWI76_RS16605	0.41	-0.8
3,438,885	-		BWI76_RS16605	0.41	-1.8
3,438,903	-		BWI76_RS16605	0.44	-2.5
3,438,943	-		BWI76_RS16605	0.52	+1.7
3,439,064	-		BWI76_RS16605	0.76	-2.4
3,439,147	+				-2.0
3,439,147	+				+0.2
3,439,147	+				-3.1
3,439,155	-				+0.7
3,439,155	-				+1.2
3,439,155	-				-0.8
3,439,155	-				+1.2
3,439,155	-				+0.4
3,439,155	-				-0.4
3,439,155	-				+0.2
3,439,182	+				-0.4
3,439,190	-				-1.6
3,439,221	+				+0.2
3,439,258	+				+0.2
3,439,282	-				-1.6
3,439,292	+				-0.6
3,439,336	-				-2.0
3,439,340	-				+2.2
3,439,347	-				-0.4
3,439,348	-				-4.2
3,439,349	-				-0.7
3,439,349	-				+0.3
3,439,374	+				-0.3
3,439,376	+				+0.4
3,439,387	+				-2.7
3,439,388	+				+0.7
3,439,410	-				-1.4
3,439,419	-				+0.2
3,439,434	+				+1.7
3,439,455	+				-2.6
3,439,458	-				+1.8
3,439,459	+				+1.2
3,439,463	-				-0.8
3,439,463	-				-0.4
3,439,487	+				-0.8
3,439,487	+				+0.8
3,439,564	+		BWI76_RS16610	0.45	-0.2
3,439,565	+		BWI76_RS16610	0.46	+0.8
3,439,586	+		BWI76_RS16610	0.58	+0.4
3,439,606	+		BWI76_RS16610	0.70	+0.6
3,439,606	+		BWI76_RS16610	0.70	+0.3
3,439,614	-		BWI76_RS16610	0.74	-0.8
3,439,639	+		BWI76_RS16610	0.89	-0.1
3,439,797	-				-0.5
3,439,941	+				+0.1
3,439,941	+				-2.1
3,440,070	-		BWI76_RS16615	0.14	-1.8
3,440,202	-		BWI76_RS16615	0.22	+1.5
3,440,283	-		BWI76_RS16615	0.27	+1.1
3,440,307	-		BWI76_RS16615	0.29	+0.7
3,440,339	-		BWI76_RS16615	0.31	-0.8
3,440,339	-		BWI76_RS16615	0.31	-3.4
3,440,503	-		BWI76_RS16615	0.41	-0.4
3,440,669	+		BWI76_RS16615	0.51	+0.1
3,440,757	-		BWI76_RS16615	0.57	+0.9
3,440,907	+		BWI76_RS16615	0.66	+1.0
3,440,907	+		BWI76_RS16615	0.66	-0.6
3,440,907	+		BWI76_RS16615	0.66	+1.5
3,441,281	+		BWI76_RS16615	0.89	+0.5
3,441,281	+		BWI76_RS16615	0.89	+1.0
3,441,281	+		BWI76_RS16615	0.89	-0.4
3,441,289	-		BWI76_RS16615	0.90	+1.6
3,441,289	-		BWI76_RS16615	0.90	+0.1
3,441,393	+				+1.2
3,441,401	-				-2.9
3,441,401	-				-2.5
3,441,590	-				-1.1
3,441,633	+				+3.4
3,441,721	+		BWI76_RS16620	0.18	+2.4
3,441,731	+		BWI76_RS16620	0.21	+0.9
3,441,764	+		BWI76_RS16620	0.29	+0.8
3,441,772	-		BWI76_RS16620	0.31	-3.1
3,441,774	+		BWI76_RS16620	0.32	-0.8
3,441,781	+		BWI76_RS16620	0.34	+0.1
3,441,782	-		BWI76_RS16620	0.34	+0.5
3,441,801	+		BWI76_RS16620	0.39	-3.6
3,441,833	+		BWI76_RS16620	0.47	+0.4
3,441,865	+		BWI76_RS16620	0.55	-2.0
3,441,888	+		BWI76_RS16620	0.61	+2.5
3,441,890	+		BWI76_RS16620	0.61	+0.2
3,441,890	+		BWI76_RS16620	0.61	+0.2
3,441,890	+		BWI76_RS16620	0.61	+0.9
3,441,890	+		BWI76_RS16620	0.61	-0.5
3,441,890	+		BWI76_RS16620	0.61	-2.6
3,441,890	+		BWI76_RS16620	0.61	+0.4
3,441,890	+		BWI76_RS16620	0.61	-1.1
3,441,890	+		BWI76_RS16620	0.61	-2.4
3,441,890	+		BWI76_RS16620	0.61	+0.1
3,441,890	+		BWI76_RS16620	0.61	+0.2
3,441,890	+		BWI76_RS16620	0.61	-1.1
3,441,896	-		BWI76_RS16620	0.63	-1.6
3,441,898	-		BWI76_RS16620	0.63	-2.1
3,441,898	-		BWI76_RS16620	0.63	-1.4
3,441,898	-		BWI76_RS16620	0.63	-1.4
3,441,898	-		BWI76_RS16620	0.63	-1.1
3,441,973	+		BWI76_RS16620	0.82	+1.1
3,441,978	+				-1.1
3,442,049	+				-2.5
3,442,052	-				+1.3
3,442,052	-				+2.5
3,442,057	-				+0.6
3,442,058	+				+1.1
3,442,066	-				-2.3
3,442,215	-				-0.0
3,442,262	-				-1.0
3,442,385	+				+1.2
3,442,385	+				-0.7
3,442,408	+				+0.2
3,442,416	-				-0.8
3,442,416	-				+0.4