Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16585
Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x |
|---|---|---|---|---|---|
| remove | |||||
| 3,434,224 | - | BWI76_RS16580 | 0.18 | -0.4 | |
| 3,434,417 | + | BWI76_RS16580 | 0.37 | -0.0 | |
| 3,434,425 | - | BWI76_RS16580 | 0.38 | -3.9 | |
| 3,434,464 | - | BWI76_RS16580 | 0.42 | -1.2 | |
| 3,434,785 | - | BWI76_RS16580 | 0.74 | -4.4 | |
| 3,434,796 | + | BWI76_RS16580 | 0.75 | +1.0 | |
| 3,434,990 | - | -0.8 | |||
| 3,435,161 | + | +1.6 | |||
| 3,435,207 | + | +0.7 | |||
| 3,435,265 | - | BWI76_RS16585 | 0.13 | +0.1 | |
| 3,435,490 | + | BWI76_RS16585 | 0.27 | -0.9 | |
| 3,435,671 | + | BWI76_RS16585 | 0.38 | +0.8 | |
| 3,435,757 | - | BWI76_RS16585 | 0.43 | +1.7 | |
| 3,435,930 | + | BWI76_RS16585 | 0.54 | -0.8 | |
| 3,436,004 | - | BWI76_RS16585 | 0.58 | +0.4 | |
| 3,436,112 | + | BWI76_RS16585 | 0.65 | +0.1 | |
| 3,436,565 | - | +2.0 | |||
| 3,436,971 | - | BWI76_RS16590 | 0.29 | +1.6 | |
| 3,437,313 | + | BWI76_RS16590 | 0.64 | -2.7 | |
| 3,437,617 | - | +0.5 |
Or see this region's nucleotide sequence