Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15795

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15785 and BWI76_RS15790 overlap by 4 nucleotidesBWI76_RS15790 and BWI76_RS15795 are separated by 133 nucleotidesBWI76_RS15795 and BWI76_RS15800 are separated by 39 nucleotidesBWI76_RS15800 and BWI76_RS15805 are separated by 104 nucleotides BWI76_RS15785: BWI76_RS15785 - replication protein, at 3,285,556 to 3,286,017 _RS15785 BWI76_RS15790: BWI76_RS15790 - replication protein, at 3,286,014 to 3,286,742 _RS15790 BWI76_RS15795: BWI76_RS15795 - bacteriophage CII family protein, at 3,286,876 to 3,287,097 _RS15795 BWI76_RS15800: BWI76_RS15800 - transcriptional regulator, at 3,287,137 to 3,287,370 _RS15800 BWI76_RS15805: BWI76_RS15805 - hypothetical protein, at 3,287,475 to 3,288,164 _RS15805 Position (kb) 3286 3287 3288Strain fitness (log2 ratio) -3 -2 -1 0 1at 3285.998 kb on + strandat 3286.105 kb on + strand, within BWI76_RS15790at 3286.245 kb on + strand, within BWI76_RS15790at 3286.453 kb on - strand, within BWI76_RS15790at 3286.687 kb on + strandat 3286.709 kb on - strandat 3286.717 kb on - strandat 3286.925 kb on + strand, within BWI76_RS15795at 3286.974 kb on + strand, within BWI76_RS15795at 3287.135 kb on + strandat 3287.186 kb on + strand, within BWI76_RS15800at 3287.292 kb on + strand, within BWI76_RS15800

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
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3,285,998 + -0.7
3,286,105 + BWI76_RS15790 0.12 +1.5
3,286,245 + BWI76_RS15790 0.32 -0.4
3,286,453 - BWI76_RS15790 0.60 +0.3
3,286,687 + -0.1
3,286,709 - +0.9
3,286,717 - +0.1
3,286,925 + BWI76_RS15795 0.22 -2.7
3,286,974 + BWI76_RS15795 0.44 -3.7
3,287,135 + -0.4
3,287,186 + BWI76_RS15800 0.21 +0.9
3,287,292 + BWI76_RS15800 0.66 +1.3

Or see this region's nucleotide sequence