Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13790
Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x |
---|---|---|---|---|---|
remove | |||||
2,874,987 | - | BWI76_RS13785 | 0.35 | -1.4 | |
2,875,108 | + | BWI76_RS13785 | 0.50 | -0.6 | |
2,875,640 | - | BWI76_RS13790 | 0.11 | +0.3 | |
2,875,700 | - | BWI76_RS13790 | 0.18 | -0.8 | |
2,875,855 | + | BWI76_RS13790 | 0.34 | -1.1 | |
2,875,877 | + | BWI76_RS13790 | 0.36 | -2.0 | |
2,875,877 | + | BWI76_RS13790 | 0.36 | -0.4 | |
2,875,885 | - | BWI76_RS13790 | 0.37 | +0.3 | |
2,875,885 | - | BWI76_RS13790 | 0.37 | +0.9 | |
2,875,994 | + | BWI76_RS13790 | 0.49 | -1.8 | |
2,876,486 | + | -1.7 | |||
2,876,494 | - | +0.5 | |||
2,876,549 | + | -0.1 | |||
2,876,621 | + | -2.8 | |||
2,876,639 | - | -2.0 | |||
2,876,898 | + | BWI76_RS13795 | 0.25 | -1.0 | |
2,877,017 | - | BWI76_RS13795 | 0.33 | +0.8 | |
2,877,091 | + | BWI76_RS13795 | 0.37 | -1.1 | |
2,877,096 | + | BWI76_RS13795 | 0.37 | +0.6 | |
2,877,160 | - | BWI76_RS13795 | 0.41 | -0.0 | |
2,877,164 | + | BWI76_RS13795 | 0.42 | +0.3 | |
2,877,165 | - | BWI76_RS13795 | 0.42 | +0.3 | |
2,877,347 | + | BWI76_RS13795 | 0.53 | -1.7 |
Or see this region's nucleotide sequence