Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07665

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
1,622,140	+		BWI76_RS07655	0.83	+1.2
1,622,140	+		BWI76_RS07655	0.83	+0.6
1,622,140	+		BWI76_RS07655	0.83	-1.9
1,622,153	+		BWI76_RS07655	0.84	+1.2
1,622,153	+		BWI76_RS07655	0.84	-2.6
1,622,153	+		BWI76_RS07655	0.84	-0.9
1,622,153	+		BWI76_RS07655	0.84	-1.8
1,622,153	+		BWI76_RS07655	0.84	-3.2
1,622,153	+		BWI76_RS07655	0.84	-0.4
1,622,153	+		BWI76_RS07655	0.84	+1.8
1,622,153	+		BWI76_RS07655	0.84	-1.8
1,622,153	+		BWI76_RS07655	0.84	+0.9
1,622,153	+		BWI76_RS07655	0.84	+1.9
1,622,153	+		BWI76_RS07655	0.84	+3.8
1,622,153	+		BWI76_RS07655	0.84	-0.8
1,622,153	+		BWI76_RS07655	0.84	-1.9
1,622,153	+		BWI76_RS07655	0.84	-1.1
1,622,153	+		BWI76_RS07655	0.84	+4.2
1,622,153	+		BWI76_RS07655	0.84	-1.9
1,622,153	+		BWI76_RS07655	0.84	-3.1
1,622,153	+		BWI76_RS07655	0.84	+0.4
1,622,153	+		BWI76_RS07655	0.84	-0.0
1,622,153	+		BWI76_RS07655	0.84	-2.6
1,622,153	+		BWI76_RS07655	0.84	-1.9
1,622,153	+		BWI76_RS07655	0.84	+1.2
1,622,153	+		BWI76_RS07655	0.84	-0.8
1,622,153	+		BWI76_RS07655	0.84	+1.6
1,622,153	+		BWI76_RS07655	0.84	+0.2
1,622,153	+		BWI76_RS07655	0.84	-1.4
1,622,153	+		BWI76_RS07655	0.84	-2.9
1,622,154	+		BWI76_RS07655	0.84	+0.4
1,622,161	-		BWI76_RS07655	0.84	-0.8
1,622,161	-		BWI76_RS07655	0.84	+3.6
1,622,161	-		BWI76_RS07655	0.84	-0.8
1,622,161	-		BWI76_RS07655	0.84	-1.6
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	-1.9
1,622,161	-		BWI76_RS07655	0.84	-3.7
1,622,161	-		BWI76_RS07655	0.84	+2.4
1,622,161	-		BWI76_RS07655	0.84	+1.9
1,622,161	-		BWI76_RS07655	0.84	+1.2
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	-1.8
1,622,161	-		BWI76_RS07655	0.84	-2.6
1,622,161	-		BWI76_RS07655	0.84	+1.4
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	+1.8
1,622,161	-		BWI76_RS07655	0.84	+2.5
1,622,161	-		BWI76_RS07655	0.84	-2.7
1,622,161	-		BWI76_RS07655	0.84	+0.8
1,622,161	-		BWI76_RS07655	0.84	-0.8
1,622,161	-		BWI76_RS07655	0.84	-1.6
1,622,161	-		BWI76_RS07655	0.84	-1.1
1,622,161	-		BWI76_RS07655	0.84	+0.9
1,622,161	-		BWI76_RS07655	0.84	-1.3
1,622,161	-		BWI76_RS07655	0.84	-1.1
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	-1.4
1,622,161	-		BWI76_RS07655	0.84	-0.5
1,622,161	-		BWI76_RS07655	0.84	-2.2
1,622,161	-		BWI76_RS07655	0.84	-0.4
1,622,161	-		BWI76_RS07655	0.84	-2.6
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	-2.5
1,622,161	-		BWI76_RS07655	0.84	+0.3
1,622,161	-		BWI76_RS07655	0.84	-2.9
1,622,161	-				-0.8
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,161	-		BWI76_RS07655	0.84	-2.1
1,622,161	-		BWI76_RS07655	0.84	-2.9
1,622,161	-		BWI76_RS07655	0.84	-1.4
1,622,161	-		BWI76_RS07655	0.84	-2.5
1,622,161	-		BWI76_RS07655	0.84	+1.2
1,622,161	-		BWI76_RS07655	0.84	+2.7
1,622,161	-				+1.6
1,622,161	-		BWI76_RS07655	0.84	+1.7
1,622,161	-		BWI76_RS07655	0.84	+0.2
1,622,165	+		BWI76_RS07655	0.84	-0.8
1,622,165	+		BWI76_RS07655	0.84	-0.4
1,622,168	-		BWI76_RS07655	0.85	+0.8
1,622,168	-		BWI76_RS07655	0.85	-0.3
1,622,183	-		BWI76_RS07655	0.86	-1.3
1,622,207	-		BWI76_RS07655	0.87	-0.8
1,622,243	-		BWI76_RS07655	0.89	+0.5
1,622,260	+				-2.8
1,622,303	+				-0.8
1,622,304	+				-0.8
1,622,360	+				-1.0
1,622,390	+				+1.2
1,622,398	-				+1.7
1,622,404	+				-1.1
1,622,410	-				+1.2
1,622,455	+				-2.2
1,622,475	-		BWI76_RS07660	0.11	-0.4
1,622,478	+		BWI76_RS07660	0.11	-0.4
1,622,486	+		BWI76_RS07660	0.13	+1.1
1,622,486	+		BWI76_RS07660	0.13	-1.9
1,622,486	+		BWI76_RS07660	0.13	+1.2
1,622,486	+		BWI76_RS07660	0.13	+1.8
1,622,491	+		BWI76_RS07660	0.14	-0.8
1,622,491	+		BWI76_RS07660	0.14	-0.5
1,622,491	+		BWI76_RS07660	0.14	-1.1
1,622,491	+		BWI76_RS07660	0.14	-0.4
1,622,491	+		BWI76_RS07660	0.14	+1.2
1,622,491	+		BWI76_RS07660	0.14	+1.2
1,622,491	+		BWI76_RS07660	0.14	-2.2
1,622,491	+		BWI76_RS07660	0.14	+0.2
1,622,491	+		BWI76_RS07660	0.14	-2.7
1,622,491	+		BWI76_RS07660	0.14	+2.2
1,622,491	+		BWI76_RS07660	0.14	+1.8
1,622,491	+		BWI76_RS07660	0.14	-2.8
1,622,491	+		BWI76_RS07660	0.14	-1.1
1,622,491	+		BWI76_RS07660	0.14	+0.2
1,622,491	+		BWI76_RS07660	0.14	-2.2
1,622,491	+		BWI76_RS07660	0.14	+1.1
1,622,491	+		BWI76_RS07660	0.14	-2.4
1,622,491	+		BWI76_RS07660	0.14	-0.4
1,622,491	+		BWI76_RS07660	0.14	-0.4
1,622,491	+				+1.2
1,622,491	+		BWI76_RS07660	0.14	+1.2
1,622,491	+		BWI76_RS07660	0.14	+1.2
1,622,491	+		BWI76_RS07660	0.14	+0.2
1,622,491	+		BWI76_RS07660	0.14	-2.2
1,622,491	+		BWI76_RS07660	0.14	+1.2
1,622,494	-		BWI76_RS07660	0.14	+0.6
1,622,499	-		BWI76_RS07660	0.15	+3.8
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	-0.1
1,622,499	-		BWI76_RS07660	0.15	-0.4
1,622,499	-		BWI76_RS07660	0.15	+0.2
1,622,499	-		BWI76_RS07660	0.15	-1.1
1,622,499	-		BWI76_RS07660	0.15	-1.4
1,622,499	-		BWI76_RS07660	0.15	-1.1
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	+2.4
1,622,499	-		BWI76_RS07660	0.15	+0.1
1,622,499	-		BWI76_RS07660	0.15	+3.8
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	-1.4
1,622,499	-		BWI76_RS07660	0.15	-0.6
1,622,499	-		BWI76_RS07660	0.15	+1.2
1,622,499	-		BWI76_RS07660	0.15	-1.9
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	-0.4
1,622,499	-		BWI76_RS07660	0.15	+1.5
1,622,499	-		BWI76_RS07660	0.15	-3.2
1,622,499	-		BWI76_RS07660	0.15	-0.4
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	+3.7
1,622,499	-		BWI76_RS07660	0.15	-0.4
1,622,499	-		BWI76_RS07660	0.15	-1.4
1,622,499	-		BWI76_RS07660	0.15	-0.8
1,622,499	-		BWI76_RS07660	0.15	+1.2
1,622,499	-		BWI76_RS07660	0.15	-2.4
1,622,499	-		BWI76_RS07660	0.15	-1.4
1,622,499	-		BWI76_RS07660	0.15	-3.2
1,622,499	-		BWI76_RS07660	0.15	+0.7
1,622,499	-		BWI76_RS07660	0.15	-1.1
1,622,499	-		BWI76_RS07660	0.15	-3.0
1,622,499	-		BWI76_RS07660	0.15	-1.1
1,622,499	-		BWI76_RS07660	0.15	-0.4
1,622,501	-		BWI76_RS07660	0.15	+0.2
1,622,509	-		BWI76_RS07660	0.16	-1.4
1,622,510	+		BWI76_RS07660	0.17	+0.2
1,622,510	+		BWI76_RS07660	0.17	-2.1
1,622,510	+		BWI76_RS07660	0.17	-0.4
1,622,518	-		BWI76_RS07660	0.18	-2.2
1,622,518	-		BWI76_RS07660	0.18	+1.2
1,622,518	-		BWI76_RS07660	0.18	+0.2
1,622,518	-		BWI76_RS07660	0.18	+0.2
1,622,518	-		BWI76_RS07660	0.18	-1.1
1,622,518	-		BWI76_RS07660	0.18	+0.9
1,622,528	-		BWI76_RS07660	0.19	+1.8
1,622,598	+		BWI76_RS07660	0.31	-1.4
1,622,613	+		BWI76_RS07660	0.33	+0.9
1,622,649	-		BWI76_RS07660	0.39	-1.8
1,622,670	+		BWI76_RS07660	0.42	+0.5
1,622,775	-		BWI76_RS07660	0.59	-1.4
1,622,781	+		BWI76_RS07660	0.60	-3.3
1,622,781	+		BWI76_RS07660	0.60	+1.6
1,622,789	-		BWI76_RS07660	0.62	-0.8
1,622,791	+		BWI76_RS07660	0.62	+1.3
1,622,791	+				+1.2
1,622,791	+		BWI76_RS07660	0.62	+0.3
1,622,791	+		BWI76_RS07660	0.62	-3.4
1,622,791	+		BWI76_RS07660	0.62	+3.2
1,622,791	+		BWI76_RS07660	0.62	-0.4
1,622,799	-		BWI76_RS07660	0.63	-1.4
1,622,799	-		BWI76_RS07660	0.63	+1.2
1,622,799	-		BWI76_RS07660	0.63	-1.6
1,622,843	-		BWI76_RS07660	0.70	-4.2
1,622,878	-				+1.2
1,623,061	-				+2.7
1,623,097	-				-0.7
1,623,118	-				-1.3
1,623,207	+		BWI76_RS07665	0.15	+1.2
1,623,215	-		BWI76_RS07665	0.15	+1.4
1,623,288	+		BWI76_RS07665	0.23	-3.9
1,623,306	-		BWI76_RS07665	0.25	-2.9
1,623,397	+		BWI76_RS07665	0.35	+1.8
1,623,397	+		BWI76_RS07665	0.35	-2.1
1,623,405	-		BWI76_RS07665	0.36	+0.9
1,623,405	-		BWI76_RS07665	0.36	-1.1
1,623,451	+		BWI76_RS07665	0.41	+4.0
1,623,459	-		BWI76_RS07665	0.41	-0.9
1,623,464	+		BWI76_RS07665	0.42	+1.9
1,623,464	+		BWI76_RS07665	0.42	-0.7
1,623,464	+		BWI76_RS07665	0.42	+1.8
1,623,464	+		BWI76_RS07665	0.42	+0.4
1,623,464	+		BWI76_RS07665	0.42	-1.4
1,623,472	-		BWI76_RS07665	0.43	+0.1
1,623,472	-		BWI76_RS07665	0.43	-0.4
1,623,472	-		BWI76_RS07665	0.43	-0.8
1,623,472	-		BWI76_RS07665	0.43	+0.6
1,623,472	-		BWI76_RS07665	0.43	+1.0
1,623,472	-		BWI76_RS07665	0.43	+0.3
1,623,472	-		BWI76_RS07665	0.43	-1.4
1,623,472	-		BWI76_RS07665	0.43	-4.2
1,623,472	-		BWI76_RS07665	0.43	+0.8
1,623,510	-		BWI76_RS07665	0.47	-1.3
1,623,521	+		BWI76_RS07665	0.48	+1.1
1,623,521	+		BWI76_RS07665	0.48	+1.5
1,623,521	+		BWI76_RS07665	0.48	+1.2
1,623,521	+		BWI76_RS07665	0.48	-0.8
1,623,521	+		BWI76_RS07665	0.48	+1.1
1,623,521	+		BWI76_RS07665	0.48	-3.0
1,623,521	+		BWI76_RS07665	0.48	+0.0
1,623,521	+		BWI76_RS07665	0.48	+0.7
1,623,521	+		BWI76_RS07665	0.48	+0.5
1,623,529	-		BWI76_RS07665	0.49	-3.1
1,623,529	-		BWI76_RS07665	0.49	+0.0
1,623,529	-		BWI76_RS07665	0.49	+0.8
1,623,529	-		BWI76_RS07665	0.49	-2.9
1,623,529	-		BWI76_RS07665	0.49	+1.1
1,623,529	-		BWI76_RS07665	0.49	+3.6
1,623,529	-		BWI76_RS07665	0.49	-2.1
1,623,535	+		BWI76_RS07665	0.50	-1.6
1,623,543	-		BWI76_RS07665	0.50	-0.1
1,623,606	-		BWI76_RS07665	0.57	+0.2
1,623,671	+		BWI76_RS07665	0.64	+1.4
1,623,726	+		BWI76_RS07665	0.70	+0.6
1,623,734	-		BWI76_RS07665	0.71	-0.8
1,623,746	-		BWI76_RS07665	0.72	+1.6
1,623,746	-		BWI76_RS07665	0.72	-2.9
1,623,746	-		BWI76_RS07665	0.72	+1.6
1,623,746	-				+1.2
1,623,751	-		BWI76_RS07665	0.73	-1.6
1,623,756	-		BWI76_RS07665	0.73	+2.6
1,623,756	-		BWI76_RS07665	0.73	+0.7
1,623,870	+		BWI76_RS07665	0.85	-2.4
1,623,894	+		BWI76_RS07665	0.88	+0.2
1,623,894	+		BWI76_RS07665	0.88	-1.1
1,623,919	+				-0.8
1,623,949	-				-0.1
1,623,970	+				-0.5
1,623,970	+				+0.5
1,623,970	+				-1.1
1,623,978	-				-4.0
1,623,978	-				-0.6
1,623,978	-				-2.9
1,623,978	-				-2.1
1,624,041	-				+0.2
1,624,052	+				-1.3
1,624,110	-				-0.1
1,624,168	+				-2.9
1,624,176	-				-0.8
1,624,176	-				-0.4
1,624,181	-				-0.9
1,624,321	-		BWI76_RS07670	0.12	+0.3
1,624,334	+		BWI76_RS07670	0.13	-2.7
1,624,355	+		BWI76_RS07670	0.14	-0.4
1,624,378	+		BWI76_RS07670	0.16	-0.8
1,624,378	+		BWI76_RS07670	0.16	-1.4
1,624,386	-		BWI76_RS07670	0.16	+0.7
1,624,386	-		BWI76_RS07670	0.16	-3.5
1,624,396	-		BWI76_RS07670	0.17	+1.2
1,624,396	-		BWI76_RS07670	0.17	+0.2
1,624,697	+		BWI76_RS07670	0.37	+0.2
1,624,932	-		BWI76_RS07670	0.52	+1.5
1,625,003	+		BWI76_RS07670	0.57	+1.8