Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06850

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06845 and BWI76_RS06850 are separated by 63 nucleotidesBWI76_RS06850 and BWI76_RS06855 are separated by 42 nucleotides BWI76_RS06845: BWI76_RS06845 - ferrochelatase, at 1,435,921 to 1,436,883 _RS06845 BWI76_RS06850: BWI76_RS06850 - inosine/guanosine kinase, at 1,436,947 to 1,438,251 _RS06850 BWI76_RS06855: BWI76_RS06855 - Kef family K(+) transporter, at 1,438,294 to 1,439,970 _RS06855 Position (kb) 1436 1437 1438 1439Strain fitness (log2 ratio) -3 -2 -1 0 1at 1437.121 kb on + strand, within BWI76_RS06850at 1437.245 kb on - strand, within BWI76_RS06850at 1437.277 kb on + strand, within BWI76_RS06850at 1437.352 kb on - strand, within BWI76_RS06850at 1437.401 kb on + strand, within BWI76_RS06850at 1437.625 kb on - strand, within BWI76_RS06850at 1437.837 kb on + strand, within BWI76_RS06850at 1438.390 kb on + strandat 1438.539 kb on - strand, within BWI76_RS06855at 1438.581 kb on - strand, within BWI76_RS06855at 1438.659 kb on - strand, within BWI76_RS06855at 1438.767 kb on + strand, within BWI76_RS06855at 1438.815 kb on + strand, within BWI76_RS06855at 1438.963 kb on + strand, within BWI76_RS06855at 1438.963 kb on + strand, within BWI76_RS06855at 1438.971 kb on - strand, within BWI76_RS06855at 1438.971 kb on - strand, within BWI76_RS06855at 1438.971 kb on - strand, within BWI76_RS06855at 1439.116 kb on + strand, within BWI76_RS06855at 1439.160 kb on - strand, within BWI76_RS06855at 1439.238 kb on + strand, within BWI76_RS06855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
remove
1,437,121 + BWI76_RS06850 0.13 +1.2
1,437,245 - BWI76_RS06850 0.23 -1.7
1,437,277 + BWI76_RS06850 0.25 -2.3
1,437,352 - BWI76_RS06850 0.31 +0.2
1,437,401 + BWI76_RS06850 0.35 -1.0
1,437,625 - BWI76_RS06850 0.52 -0.6
1,437,837 + BWI76_RS06850 0.68 +1.2
1,438,390 + +1.4
1,438,539 - BWI76_RS06855 0.15 -0.3
1,438,581 - BWI76_RS06855 0.17 -2.6
1,438,659 - BWI76_RS06855 0.22 -1.8
1,438,767 + BWI76_RS06855 0.28 -0.2
1,438,815 + BWI76_RS06855 0.31 -0.1
1,438,963 + BWI76_RS06855 0.40 +0.0
1,438,963 + BWI76_RS06855 0.40 +1.0
1,438,971 - BWI76_RS06855 0.40 +0.2
1,438,971 - BWI76_RS06855 0.40 +1.4
1,438,971 - BWI76_RS06855 0.40 -0.7
1,439,116 + BWI76_RS06855 0.49 -3.4
1,439,160 - BWI76_RS06855 0.52 +1.6
1,439,238 + BWI76_RS06855 0.56 -0.1

Or see this region's nucleotide sequence