Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04945

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
1,036,335	-		BWI76_RS04935	0.58	-1.8
1,036,371	+		BWI76_RS04935	0.69	-1.4
1,036,371	+		BWI76_RS04935	0.69	+0.9
1,036,371	+		BWI76_RS04935	0.69	-1.4
1,036,371	+		BWI76_RS04935	0.69	+0.4
1,036,371	+		BWI76_RS04935	0.69	-0.4
1,036,371	+		BWI76_RS04935	0.69	-1.2
1,036,371	+		BWI76_RS04935	0.69	-1.1
1,036,379	-		BWI76_RS04935	0.71	+3.9
1,036,380	-		BWI76_RS04935	0.72	+1.2
1,036,382	+		BWI76_RS04935	0.72	+0.3
1,036,392	+		BWI76_RS04935	0.75	-0.5
1,036,392	+		BWI76_RS04935	0.75	-2.7
1,036,406	+		BWI76_RS04935	0.80	-3.3
1,036,417	+		BWI76_RS04935	0.83	+3.5
1,036,417	+		BWI76_RS04935	0.83	-0.8
1,036,417	+		BWI76_RS04935	0.83	+1.2
1,036,417	+		BWI76_RS04935	0.83	+0.7
1,036,417	+		BWI76_RS04935	0.83	+1.2
1,036,417	+		BWI76_RS04935	0.83	+1.2
1,036,417	+		BWI76_RS04935	0.83	+0.2
1,036,417	+		BWI76_RS04935	0.83	+0.4
1,036,417	+		BWI76_RS04935	0.83	-1.4
1,036,417	+		BWI76_RS04935	0.83	-0.4
1,036,417	+		BWI76_RS04935	0.83	-1.1
1,036,417	+		BWI76_RS04935	0.83	-0.4
1,036,422	+		BWI76_RS04935	0.84	-0.4
1,036,422	+		BWI76_RS04935	0.84	-2.8
1,036,422	+		BWI76_RS04935	0.84	-1.8
1,036,425	-		BWI76_RS04935	0.85	+1.2
1,036,425	-		BWI76_RS04935	0.85	+1.2
1,036,425	-		BWI76_RS04935	0.85	-1.4
1,036,425	-		BWI76_RS04935	0.85	-1.1
1,036,425	-		BWI76_RS04935	0.85	-0.8
1,036,425	-		BWI76_RS04935	0.85	-1.1
1,036,425	-		BWI76_RS04935	0.85	+3.2
1,036,425	-		BWI76_RS04935	0.85	+1.2
1,036,425	-		BWI76_RS04935	0.85	+1.5
1,036,425	-		BWI76_RS04935	0.85	+0.2
1,036,427	-		BWI76_RS04935	0.86	+1.2
1,036,427	-		BWI76_RS04935	0.86	+1.2
1,036,435	-		BWI76_RS04935	0.88	+1.2
1,036,451	-				-0.8
1,036,486	+				-1.1
1,036,494	-				+1.2
1,036,536	-				-0.8
1,036,543	-				+0.2
1,036,600	+				+1.2
1,036,789	-				-0.4
1,036,850	-				-2.0
1,036,850	-				+0.2
1,036,852	+				+0.2
1,036,852	+				-0.8
1,036,852	+				+1.2
1,036,852	+				+1.6
1,036,852	+				-1.0
1,036,852	+				+0.7
1,036,852	+				-2.8
1,036,852	+				+0.2
1,036,852	+				-0.4
1,036,852	+				-0.9
1,036,852	+				+0.9
1,036,852	+				+0.0
1,036,852	+				-2.0
1,036,852	+				+1.2
1,036,857	+				+0.4
1,036,860	-				+0.2
1,036,860	-				+0.3
1,036,860	-				-1.1
1,036,860	-				-3.4
1,036,860	-				-3.9
1,036,860	-				+1.7
1,036,860	-				-0.8
1,036,860	-				+0.1
1,036,860	-				-0.4
1,036,860	-				+0.5
1,036,860	-				-2.7
1,036,860	-				-2.7
1,036,860	-				+1.8
1,036,860	-				-1.7
1,036,860	-				-2.7
1,036,860	-				+1.2
1,036,868	+		BWI76_RS04940	0.10	+1.2
1,036,868	+		BWI76_RS04940	0.10	-2.6
1,036,868	+		BWI76_RS04940	0.10	+1.1
1,036,884	-		BWI76_RS04940	0.15	-1.6
1,036,915	+		BWI76_RS04940	0.24	+0.2
1,036,915	+		BWI76_RS04940	0.24	-0.8
1,036,918	-		BWI76_RS04940	0.25	-2.8
1,036,923	-		BWI76_RS04940	0.26	-3.5
1,036,923	-		BWI76_RS04940	0.26	+1.9
1,036,923	-		BWI76_RS04940	0.26	-3.1
1,036,923	-		BWI76_RS04940	0.26	-3.9
1,036,925	+		BWI76_RS04940	0.27	+1.2
1,036,928	+		BWI76_RS04940	0.28	+1.9
1,036,929	+		BWI76_RS04940	0.28	+0.2
1,036,937	-		BWI76_RS04940	0.30	+0.4
1,036,948	+		BWI76_RS04940	0.33	-0.4
1,037,022	+		BWI76_RS04940	0.55	+1.2
1,037,040	-		BWI76_RS04940	0.60	+0.2
1,037,043	+		BWI76_RS04940	0.61	+0.9
1,037,071	-		BWI76_RS04940	0.69	+0.3
1,037,085	+		BWI76_RS04940	0.73	+0.9
1,037,113	+		BWI76_RS04940	0.81	-0.3
1,037,115	+		BWI76_RS04940	0.81	-2.7
1,037,128	-		BWI76_RS04940	0.85	+2.1
1,037,152	+				-1.4
1,037,196	-				+0.0
1,037,209	+				+0.2
1,037,209	-				-1.4
1,037,214	+				+0.8
1,037,222	+				-1.5
1,037,222	+				-0.0
1,037,222	+				-0.2
1,037,222	+				+1.0
1,037,222	+				-2.0
1,037,222	+				-2.2
1,037,222	+				-0.5
1,037,222	-				-0.1
1,037,227	+				-0.4
1,037,230	-				-2.0
1,037,230	-				+2.4
1,037,230	-				+0.3
1,037,230	-				+1.1
1,037,230	-				+0.6
1,037,230	-				+0.3
1,037,289	-				-1.4
1,037,383	+				-2.1
1,037,386	+				-2.1
1,037,523	-		BWI76_RS04945	0.12	+1.1
1,037,562	-		BWI76_RS04945	0.15	-1.2
1,037,620	+		BWI76_RS04945	0.19	-0.1
1,037,635	+		BWI76_RS04945	0.20	+0.8
1,037,644	-		BWI76_RS04945	0.20	-1.1
1,037,644	-		BWI76_RS04945	0.20	-0.5
1,037,716	-		BWI76_RS04945	0.25	+0.1
1,037,910	+		BWI76_RS04945	0.37	-0.1
1,037,973	-		BWI76_RS04945	0.41	+1.3
1,038,283	+		BWI76_RS04945	0.60	+3.0
1,038,350	+		BWI76_RS04945	0.65	+0.2
1,038,540	+		BWI76_RS04945	0.77	-0.0
1,038,548	-		BWI76_RS04945	0.77	-1.6
1,038,650	-		BWI76_RS04945	0.84	+0.6
1,039,097	+				-0.1
1,039,258	+		BWI76_RS04950	0.11	-0.8
1,039,310	-		BWI76_RS04950	0.13	+0.5
1,039,373	-		BWI76_RS04950	0.16	+0.0
1,039,639	+		BWI76_RS04950	0.27	+0.6