Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04220 and BWI76_RS04225 are separated by 57 nucleotides BWI76_RS04225 and BWI76_RS04230 are separated by 53 nucleotides
BWI76_RS04220: BWI76_RS04220 - two-component sensor histidine kinase, at 867,231 to 868,655
_RS04220
BWI76_RS04225: BWI76_RS04225 - cell envelope integrity protein CreD, at 868,713 to 870,071
_RS04225
BWI76_RS04230: BWI76_RS04230 - DNA-binding response regulator, at 870,125 to 870,841
_RS04230
Position (kb) 868
869
870
871 Strain fitness (log2 ratio) -2
-1
0
1
2 at 867.714 kb on + strand, within BWI76_RS04220 at 867.775 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.948 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 868.189 kb on + strand, within BWI76_RS04220 at 868.269 kb on + strand, within BWI76_RS04220 at 868.438 kb on + strand, within BWI76_RS04220 at 868.679 kb on + strand at 868.749 kb on + strand at 868.759 kb on + strand at 868.843 kb on - strand at 868.848 kb on - strand at 869.085 kb on - strand, within BWI76_RS04225 at 869.121 kb on + strand, within BWI76_RS04225 at 869.144 kb on + strand, within BWI76_RS04225 at 869.336 kb on + strand, within BWI76_RS04225 at 869.456 kb on - strand, within BWI76_RS04225 at 869.486 kb on + strand, within BWI76_RS04225 at 869.580 kb on + strand, within BWI76_RS04225 at 869.664 kb on - strand, within BWI76_RS04225 at 869.664 kb on - strand, within BWI76_RS04225 at 869.801 kb on - strand, within BWI76_RS04225 at 869.814 kb on - strand, within BWI76_RS04225 at 869.837 kb on + strand, within BWI76_RS04225 at 870.011 kb on + strand at 870.897 kb on - strand at 870.897 kb on - strand at 871.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 867,714 + BWI76_RS04220 0.34 +0.5 867,775 + BWI76_RS04220 0.38 -2.5 867,928 + BWI76_RS04220 0.49 +1.2 867,928 + BWI76_RS04220 0.49 +0.4 867,936 - BWI76_RS04220 0.49 -1.4 867,936 - BWI76_RS04220 0.49 +1.3 867,936 - BWI76_RS04220 0.49 +0.5 867,948 + BWI76_RS04220 0.50 -1.7 867,970 + BWI76_RS04220 0.52 +0.9 867,970 + BWI76_RS04220 0.52 +0.7 868,189 + BWI76_RS04220 0.67 +0.0 868,269 + BWI76_RS04220 0.73 +1.4 868,438 + BWI76_RS04220 0.85 -0.2 868,679 + -0.6 868,749 + +0.3 868,759 + -0.5 868,843 - -0.8 868,848 - +0.8 869,085 - BWI76_RS04225 0.27 -0.0 869,121 + BWI76_RS04225 0.30 +1.1 869,144 + BWI76_RS04225 0.32 +1.9 869,336 + BWI76_RS04225 0.46 +1.2 869,456 - BWI76_RS04225 0.55 +1.3 869,486 + BWI76_RS04225 0.57 +0.9 869,580 + BWI76_RS04225 0.64 +0.2 869,664 - BWI76_RS04225 0.70 +1.5 869,664 - BWI76_RS04225 0.70 +1.1 869,801 - BWI76_RS04225 0.80 +1.7 869,814 - BWI76_RS04225 0.81 -0.8 869,837 + BWI76_RS04225 0.83 +2.4 870,011 + +0.7 870,897 - -2.4 870,897 - -0.4 871,043 - +0.7
Or see this region's nucleotide sequence