Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03875 and BWI76_RS03880 are separated by 284 nucleotides BWI76_RS03880 and BWI76_RS03885 are separated by 118 nucleotides BWI76_RS03885 and BWI76_RS03890 are separated by 201 nucleotides
BWI76_RS03875: BWI76_RS03875 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 801,398 to 802,030
_RS03875
BWI76_RS03880: BWI76_RS03880 - homoprotocatechuate degradation operon regulator, HpaR, at 802,315 to 802,752
_RS03880
BWI76_RS03885: BWI76_RS03885 - hypothetical protein, at 802,871 to 804,085
_RS03885
BWI76_RS03890: BWI76_RS03890 - hypothetical protein, at 804,287 to 805,726
_RS03890
Position (kb) 802
803
804
805 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 801.950 kb on - strand, within BWI76_RS03875 at 801.957 kb on + strand, within BWI76_RS03875 at 802.313 kb on - strand at 802.514 kb on + strand, within BWI76_RS03880 at 802.532 kb on + strand, within BWI76_RS03880 at 802.540 kb on - strand, within BWI76_RS03880 at 802.741 kb on + strand at 802.891 kb on - strand at 802.899 kb on + strand at 802.900 kb on + strand at 803.270 kb on + strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.398 kb on + strand, within BWI76_RS03885 at 803.502 kb on + strand, within BWI76_RS03885 at 803.510 kb on - strand, within BWI76_RS03885 at 803.520 kb on - strand, within BWI76_RS03885 at 803.535 kb on - strand, within BWI76_RS03885 at 803.541 kb on - strand, within BWI76_RS03885 at 803.804 kb on + strand, within BWI76_RS03885 at 803.824 kb on + strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 804.467 kb on + strand, within BWI76_RS03890 at 804.483 kb on + strand, within BWI76_RS03890 at 804.605 kb on - strand, within BWI76_RS03890 at 804.683 kb on + strand, within BWI76_RS03890 at 804.875 kb on + strand, within BWI76_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 801,950 - BWI76_RS03875 0.87 -0.0 801,957 + BWI76_RS03875 0.88 -0.8 802,313 - -1.0 802,514 + BWI76_RS03880 0.45 -1.0 802,532 + BWI76_RS03880 0.50 -0.5 802,540 - BWI76_RS03880 0.51 -1.7 802,741 + +0.0 802,891 - +0.8 802,899 + -3.9 802,900 + -2.2 803,270 + BWI76_RS03885 0.33 +1.3 803,376 - BWI76_RS03885 0.42 +0.3 803,376 - BWI76_RS03885 0.42 -0.3 803,398 + BWI76_RS03885 0.43 -1.5 803,502 + BWI76_RS03885 0.52 +1.3 803,510 - BWI76_RS03885 0.53 -0.5 803,520 - BWI76_RS03885 0.53 -1.3 803,535 - BWI76_RS03885 0.55 -2.5 803,541 - BWI76_RS03885 0.55 +0.2 803,804 + BWI76_RS03885 0.77 -1.9 803,824 + BWI76_RS03885 0.78 +1.5 803,940 - BWI76_RS03885 0.88 +3.9 803,940 - BWI76_RS03885 0.88 -0.4 804,467 + BWI76_RS03890 0.12 -0.8 804,483 + BWI76_RS03890 0.14 -0.3 804,605 - BWI76_RS03890 0.22 +1.5 804,683 + BWI76_RS03890 0.28 -1.7 804,875 + BWI76_RS03890 0.41 -1.5
Or see this region's nucleotide sequence