Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03760

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS03755 and BWI76_RS03760 overlap by 1 nucleotidesBWI76_RS03760 and BWI76_RS03765 are separated by 10 nucleotides BWI76_RS03755: BWI76_RS03755 - phosphoadenosine phosphosulfate reductase, at 777,414 to 778,625 _RS03755 BWI76_RS03760: BWI76_RS03760 - hypothetical protein, at 778,625 to 779,251 _RS03760 BWI76_RS03765: BWI76_RS03765 - MFS transporter, at 779,262 to 780,503 _RS03765 Position (kb) 778 779 780Strain fitness (log2 ratio) -2 -1 0 1 2at 777.653 kb on + strand, within BWI76_RS03755at 777.655 kb on + strand, within BWI76_RS03755at 777.655 kb on + strand, within BWI76_RS03755at 777.663 kb on - strand, within BWI76_RS03755at 777.663 kb on - strand, within BWI76_RS03755at 777.663 kb on - strand, within BWI76_RS03755at 777.705 kb on + strand, within BWI76_RS03755at 777.707 kb on - strand, within BWI76_RS03755at 777.712 kb on + strand, within BWI76_RS03755at 777.712 kb on + strand, within BWI76_RS03755at 777.712 kb on + strand, within BWI76_RS03755at 777.712 kb on + strand, within BWI76_RS03755at 777.754 kb on + strand, within BWI76_RS03755at 777.769 kb on + strand, within BWI76_RS03755at 777.944 kb on - strand, within BWI76_RS03755at 778.013 kb on + strand, within BWI76_RS03755at 778.034 kb on - strand, within BWI76_RS03755at 778.079 kb on + strand, within BWI76_RS03755at 778.089 kb on - strand, within BWI76_RS03755at 778.174 kb on + strand, within BWI76_RS03755at 778.225 kb on - strand, within BWI76_RS03755at 778.279 kb on + strand, within BWI76_RS03755at 778.287 kb on - strand, within BWI76_RS03755at 778.559 kb on + strandat 778.566 kb on - strandat 778.568 kb on - strandat 778.576 kb on - strandat 778.627 kb on - strandat 778.724 kb on - strand, within BWI76_RS03760at 778.806 kb on + strand, within BWI76_RS03760at 778.806 kb on + strand, within BWI76_RS03760at 778.814 kb on - strand, within BWI76_RS03760at 778.874 kb on - strand, within BWI76_RS03760at 778.933 kb on + strand, within BWI76_RS03760at 778.973 kb on + strand, within BWI76_RS03760at 779.072 kb on + strand, within BWI76_RS03760at 779.121 kb on + strand, within BWI76_RS03760at 779.242 kb on - strandat 779.622 kb on + strand, within BWI76_RS03765at 779.688 kb on - strand, within BWI76_RS03765at 779.695 kb on - strand, within BWI76_RS03765at 779.877 kb on + strand, within BWI76_RS03765at 779.908 kb on - strand, within BWI76_RS03765at 780.009 kb on + strand, within BWI76_RS03765at 780.017 kb on - strand, within BWI76_RS03765at 780.151 kb on + strand, within BWI76_RS03765at 780.180 kb on + strand, within BWI76_RS03765at 780.180 kb on + strand, within BWI76_RS03765at 780.224 kb on + strand, within BWI76_RS03765at 780.224 kb on + strand, within BWI76_RS03765at 780.232 kb on - strand, within BWI76_RS03765at 780.241 kb on + strand, within BWI76_RS03765at 780.251 kb on + strand, within BWI76_RS03765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
remove
777,653 + BWI76_RS03755 0.20 +0.9
777,655 + BWI76_RS03755 0.20 +1.4
777,655 + BWI76_RS03755 0.20 +0.1
777,663 - BWI76_RS03755 0.21 +0.3
777,663 - BWI76_RS03755 0.21 -2.5
777,663 - BWI76_RS03755 0.21 +0.1
777,705 + BWI76_RS03755 0.24 -2.0
777,707 - BWI76_RS03755 0.24 +0.1
777,712 + BWI76_RS03755 0.25 -0.3
777,712 + BWI76_RS03755 0.25 -1.0
777,712 + BWI76_RS03755 0.25 +1.1
777,712 + BWI76_RS03755 0.25 -1.0
777,754 + BWI76_RS03755 0.28 +0.7
777,769 + BWI76_RS03755 0.29 -2.2
777,944 - BWI76_RS03755 0.44 +0.9
778,013 + BWI76_RS03755 0.49 -2.4
778,034 - BWI76_RS03755 0.51 +0.1
778,079 + BWI76_RS03755 0.55 +0.5
778,089 - BWI76_RS03755 0.56 -1.5
778,174 + BWI76_RS03755 0.63 -0.4
778,225 - BWI76_RS03755 0.67 +1.4
778,279 + BWI76_RS03755 0.71 +0.5
778,287 - BWI76_RS03755 0.72 -0.7
778,559 + +1.0
778,566 - -0.7
778,568 - -0.8
778,576 - -1.7
778,627 - -0.7
778,724 - BWI76_RS03760 0.16 +0.6
778,806 + BWI76_RS03760 0.29 -1.3
778,806 + BWI76_RS03760 0.29 +1.5
778,814 - BWI76_RS03760 0.30 -0.1
778,874 - BWI76_RS03760 0.40 +2.5
778,933 + BWI76_RS03760 0.49 +0.7
778,973 + BWI76_RS03760 0.56 +0.4
779,072 + BWI76_RS03760 0.71 +0.5
779,121 + BWI76_RS03760 0.79 +0.8
779,242 - -0.7
779,622 + BWI76_RS03765 0.29 +0.2
779,688 - BWI76_RS03765 0.34 +0.9
779,695 - BWI76_RS03765 0.35 +1.7
779,877 + BWI76_RS03765 0.50 -2.3
779,908 - BWI76_RS03765 0.52 +2.4
780,009 + BWI76_RS03765 0.60 -0.1
780,017 - BWI76_RS03765 0.61 +1.3
780,151 + BWI76_RS03765 0.72 -0.3
780,180 + BWI76_RS03765 0.74 -0.9
780,180 + BWI76_RS03765 0.74 -0.7
780,224 + BWI76_RS03765 0.77 +1.1
780,224 + BWI76_RS03765 0.77 +2.0
780,232 - BWI76_RS03765 0.78 +0.7
780,241 + BWI76_RS03765 0.79 +1.0
780,251 + BWI76_RS03765 0.80 -1.0

Or see this region's nucleotide sequence