Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02790 and BWI76_RS02795 are separated by 403 nucleotides BWI76_RS02795 and BWI76_RS02800 are separated by 180 nucleotides
BWI76_RS02790: BWI76_RS02790 - inorganic pyrophosphatase, at 569,224 to 569,751
_RS02790
BWI76_RS02795: BWI76_RS02795 - periplasmic binding protein/LacI transcriptional regulator, at 570,155 to 571,111
_RS02795
BWI76_RS02800: BWI76_RS02800 - ABC transporter, at 571,292 to 572,794
_RS02800
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.798 kb on - strand at 569.849 kb on - strand at 570.020 kb on + strand at 570.096 kb on + strand at 570.145 kb on - strand at 570.208 kb on + strand at 570.322 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.536 kb on - strand, within BWI76_RS02795 at 570.577 kb on + strand, within BWI76_RS02795 at 570.619 kb on + strand, within BWI76_RS02795 at 570.747 kb on - strand, within BWI76_RS02795 at 570.808 kb on - strand, within BWI76_RS02795 at 570.937 kb on + strand, within BWI76_RS02795 at 570.945 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 571.068 kb on - strand at 571.171 kb on - strand at 571.189 kb on + strand at 571.271 kb on + strand at 571.271 kb on + strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.311 kb on + strand at 571.430 kb on + strand at 571.767 kb on + strand, within BWI76_RS02800 at 571.814 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 572.002 kb on + strand, within BWI76_RS02800 at 572.058 kb on + strand, within BWI76_RS02800
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 569,798 - -0.2 569,849 - -0.1 570,020 + -0.6 570,096 + +1.2 570,145 - +2.4 570,208 + +0.5 570,322 + BWI76_RS02795 0.17 -1.6 570,440 + BWI76_RS02795 0.30 +2.4 570,440 + BWI76_RS02795 0.30 +1.0 570,536 - BWI76_RS02795 0.40 +0.9 570,577 + BWI76_RS02795 0.44 +0.9 570,619 + BWI76_RS02795 0.48 +0.5 570,747 - BWI76_RS02795 0.62 +1.4 570,808 - BWI76_RS02795 0.68 -1.6 570,937 + BWI76_RS02795 0.82 -2.0 570,945 - BWI76_RS02795 0.83 -0.5 570,946 - BWI76_RS02795 0.83 +0.4 570,946 - BWI76_RS02795 0.83 +0.2 571,068 - +0.9 571,171 - +0.6 571,189 + -2.0 571,271 + +0.9 571,271 + +1.4 571,279 - +1.5 571,279 - +0.8 571,279 - +0.5 571,311 + +0.0 571,430 + +0.2 571,767 + BWI76_RS02800 0.32 +1.4 571,814 + BWI76_RS02800 0.35 +0.3 571,912 + BWI76_RS02800 0.41 -0.8 571,912 + BWI76_RS02800 0.41 +1.6 572,002 + BWI76_RS02800 0.47 +1.3 572,058 + BWI76_RS02800 0.51 +0.4
Or see this region's nucleotide sequence