Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02680 and BWI76_RS02685 are separated by 4 nucleotides BWI76_RS02685 and BWI76_RS02690 are separated by 139 nucleotides BWI76_RS02690 and BWI76_RS02695 overlap by 69 nucleotides BWI76_RS02695 and BWI76_RS02700 are separated by 305 nucleotides
BWI76_RS02680: BWI76_RS02680 - EamA family transporter, at 544,058 to 545,011
_RS02680
BWI76_RS02685: BWI76_RS02685 - opacity-associated protein, at 545,016 to 545,675
_RS02685
BWI76_RS02690: BWI76_RS02690 - hypothetical protein, at 545,815 to 546,012
_RS02690
BWI76_RS02695: BWI76_RS02695 - peptidyl-prolyl cis-trans isomerase, at 545,944 to 546,564
_RS02695
BWI76_RS02700: BWI76_RS02700 - D-serine/D-alanine/glycine transporter, at 546,870 to 548,273
_RS02700
Position (kb) 545
546
547 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 544.880 kb on + strand, within BWI76_RS02680 at 545.124 kb on + strand, within BWI76_RS02685 at 545.147 kb on + strand, within BWI76_RS02685 at 545.150 kb on - strand, within BWI76_RS02685 at 545.207 kb on + strand, within BWI76_RS02685 at 545.224 kb on + strand, within BWI76_RS02685 at 545.265 kb on - strand, within BWI76_RS02685 at 545.499 kb on + strand, within BWI76_RS02685 at 545.507 kb on - strand, within BWI76_RS02685 at 545.713 kb on + strand at 545.776 kb on - strand at 545.776 kb on - strand at 545.782 kb on + strand at 545.867 kb on + strand, within BWI76_RS02690 at 545.966 kb on + strand at 546.155 kb on - strand, within BWI76_RS02695 at 546.318 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.519 kb on + strand at 546.597 kb on - strand at 546.621 kb on - strand at 546.708 kb on + strand at 546.792 kb on + strand at 546.804 kb on + strand at 546.806 kb on - strand at 546.841 kb on + strand at 546.879 kb on - strand at 546.889 kb on - strand at 546.889 kb on - strand at 546.905 kb on + strand at 546.913 kb on - strand at 546.982 kb on + strand at 547.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 544,880 + BWI76_RS02680 0.86 -1.2 545,124 + BWI76_RS02685 0.16 -1.4 545,147 + BWI76_RS02685 0.20 +2.6 545,150 - BWI76_RS02685 0.20 +0.2 545,207 + BWI76_RS02685 0.29 +0.9 545,224 + BWI76_RS02685 0.32 +1.1 545,265 - BWI76_RS02685 0.38 -0.9 545,499 + BWI76_RS02685 0.73 -4.3 545,507 - BWI76_RS02685 0.74 -1.1 545,713 + +0.0 545,776 - +2.0 545,776 - -0.6 545,782 + +1.3 545,867 + BWI76_RS02690 0.26 -5.2 545,966 + -1.6 546,155 - BWI76_RS02695 0.34 +1.9 546,318 + BWI76_RS02695 0.60 +0.6 546,480 + BWI76_RS02695 0.86 -0.5 546,480 + BWI76_RS02695 0.86 +0.0 546,519 + -1.8 546,597 - -1.6 546,621 - +2.0 546,708 + -0.6 546,792 + +0.3 546,804 + +1.2 546,806 - +0.9 546,841 + +5.0 546,879 - -1.7 546,889 - +2.3 546,889 - +0.1 546,905 + +1.9 546,913 - +0.9 546,982 + +0.9 547,000 - -2.0
Or see this region's nucleotide sequence