Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02410 and BWI76_RS02415 are separated by 42 nucleotides BWI76_RS02415 and BWI76_RS02420 are separated by 70 nucleotides BWI76_RS02420 and BWI76_RS02425 are separated by 163 nucleotides BWI76_RS02425 and BWI76_RS02430 are separated by 140 nucleotides BWI76_RS02430 and BWI76_RS02435 overlap by 4 nucleotides
BWI76_RS02410: BWI76_RS02410 - EF-P beta-lysylation protein EpmB, at 496,886 to 497,914
_RS02410
BWI76_RS02415: BWI76_RS02415 - elongation factor P, at 497,957 to 498,523
_RS02415
BWI76_RS02420: BWI76_RS02420 - entericidin EcnAB, at 498,594 to 498,728
_RS02420
BWI76_RS02425: BWI76_RS02425 - entericidin B, at 498,892 to 499,038
_RS02425
BWI76_RS02430: BWI76_RS02430 - multidrug transporter, at 499,179 to 499,496
_RS02430
BWI76_RS02435: BWI76_RS02435 - outer membrane lipoprotein Blc, at 499,493 to 500,023
_RS02435
Position (kb) 498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.624 kb on - strand, within BWI76_RS02410 at 498.557 kb on - strand at 498.561 kb on + strand at 498.563 kb on + strand at 498.569 kb on - strand at 498.573 kb on + strand at 498.573 kb on + strand at 498.640 kb on + strand, within BWI76_RS02420 at 498.640 kb on + strand, within BWI76_RS02420 at 498.648 kb on - strand, within BWI76_RS02420 at 498.656 kb on + strand, within BWI76_RS02420 at 498.729 kb on + strand at 498.740 kb on - strand at 498.765 kb on - strand at 498.826 kb on + strand at 498.871 kb on - strand at 498.890 kb on - strand at 498.925 kb on - strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.946 kb on - strand, within BWI76_RS02425 at 498.946 kb on - strand, within BWI76_RS02425 at 498.951 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 499.020 kb on + strand, within BWI76_RS02425 at 499.060 kb on + strand at 499.148 kb on + strand at 499.196 kb on + strand at 499.202 kb on - strand at 499.211 kb on + strand, within BWI76_RS02430 at 499.211 kb on + strand, within BWI76_RS02430 at 499.219 kb on - strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.308 kb on + strand, within BWI76_RS02430 at 499.324 kb on - strand, within BWI76_RS02430 at 499.359 kb on + strand, within BWI76_RS02430 at 499.392 kb on - strand, within BWI76_RS02430 at 499.397 kb on - strand, within BWI76_RS02430 at 499.468 kb on + strand at 499.491 kb on + strand at 499.499 kb on - strand at 499.510 kb on + strand at 499.606 kb on + strand, within BWI76_RS02435 at 499.614 kb on - strand, within BWI76_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 497,624 - BWI76_RS02410 0.72 -0.3 498,557 - -2.9 498,561 + -1.0 498,563 + -0.3 498,569 - -0.3 498,573 + +2.9 498,573 + +0.2 498,640 + BWI76_RS02420 0.34 -2.6 498,640 + BWI76_RS02420 0.34 +0.5 498,648 - BWI76_RS02420 0.40 +0.3 498,656 + BWI76_RS02420 0.46 -2.0 498,729 + -0.2 498,740 - -0.7 498,765 - +0.6 498,826 + +0.5 498,871 - -2.2 498,890 - -0.7 498,925 - BWI76_RS02425 0.22 -3.0 498,938 + BWI76_RS02425 0.31 -3.0 498,938 + BWI76_RS02425 0.31 -0.4 498,938 + BWI76_RS02425 0.31 -1.5 498,938 + BWI76_RS02425 0.31 +2.0 498,938 + BWI76_RS02425 0.31 +0.9 498,946 - BWI76_RS02425 0.37 +0.8 498,946 - BWI76_RS02425 0.37 -0.0 498,951 - BWI76_RS02425 0.40 +0.2 498,962 - BWI76_RS02425 0.48 +0.6 498,962 - BWI76_RS02425 0.48 +1.3 498,962 - BWI76_RS02425 0.48 -3.4 499,020 + BWI76_RS02425 0.87 -3.5 499,060 + +0.8 499,148 + -0.5 499,196 + +0.5 499,202 - +0.6 499,211 + BWI76_RS02430 0.10 +0.1 499,211 + BWI76_RS02430 0.10 +1.1 499,219 - BWI76_RS02430 0.13 -0.1 499,220 + BWI76_RS02430 0.13 +1.2 499,220 + BWI76_RS02430 0.13 -0.4 499,308 + BWI76_RS02430 0.41 -0.1 499,324 - BWI76_RS02430 0.46 -0.0 499,359 + BWI76_RS02430 0.57 -1.3 499,392 - BWI76_RS02430 0.67 -2.5 499,397 - BWI76_RS02430 0.69 +0.8 499,468 + -1.3 499,491 + -1.3 499,499 - -3.6 499,510 + -3.1 499,606 + BWI76_RS02435 0.21 -1.5 499,614 - BWI76_RS02435 0.23 +0.4
Or see this region's nucleotide sequence