Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02100

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02095 and BWI76_RS02100 are separated by 92 nucleotidesBWI76_RS02100 and BWI76_RS02105 are separated by 67 nucleotides BWI76_RS02095: BWI76_RS02095 - acetyl-coenzyme A synthetase, at 431,834 to 433,792 _RS02095 BWI76_RS02100: BWI76_RS02100 - hypothetical protein, at 433,885 to 434,136 _RS02100 BWI76_RS02105: BWI76_RS02105 - glutamate/aspartate:proton symporter GltP, at 434,204 to 435,517 _RS02105 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 432.975 kb on + strand, within BWI76_RS02095at 432.983 kb on - strand, within BWI76_RS02095at 433.039 kb on + strand, within BWI76_RS02095at 433.080 kb on + strand, within BWI76_RS02095at 433.138 kb on - strand, within BWI76_RS02095at 433.182 kb on + strand, within BWI76_RS02095at 433.413 kb on + strand, within BWI76_RS02095at 433.513 kb on - strand, within BWI76_RS02095at 433.716 kb on + strandat 433.726 kb on + strandat 434.147 kb on + strandat 434.196 kb on + strandat 434.258 kb on - strandat 434.275 kb on - strandat 434.316 kb on + strandat 434.353 kb on - strand, within BWI76_RS02105at 434.387 kb on + strand, within BWI76_RS02105at 434.481 kb on + strand, within BWI76_RS02105at 434.484 kb on - strand, within BWI76_RS02105at 434.502 kb on + strand, within BWI76_RS02105at 434.510 kb on - strand, within BWI76_RS02105at 434.600 kb on + strand, within BWI76_RS02105at 434.608 kb on - strand, within BWI76_RS02105at 434.848 kb on + strand, within BWI76_RS02105at 434.848 kb on + strand, within BWI76_RS02105at 434.948 kb on + strand, within BWI76_RS02105at 435.076 kb on + strand, within BWI76_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
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432,975 + BWI76_RS02095 0.58 -0.3
432,983 - BWI76_RS02095 0.59 -1.6
433,039 + BWI76_RS02095 0.62 +0.1
433,080 + BWI76_RS02095 0.64 -0.6
433,138 - BWI76_RS02095 0.67 -0.8
433,182 + BWI76_RS02095 0.69 -1.2
433,413 + BWI76_RS02095 0.81 -1.1
433,513 - BWI76_RS02095 0.86 -2.4
433,716 + -0.3
433,726 + -2.4
434,147 + +1.9
434,196 + -0.1
434,258 - -0.3
434,275 - -1.2
434,316 + +0.8
434,353 - BWI76_RS02105 0.11 +0.6
434,387 + BWI76_RS02105 0.14 +0.3
434,481 + BWI76_RS02105 0.21 +0.6
434,484 - BWI76_RS02105 0.21 -0.3
434,502 + BWI76_RS02105 0.23 -2.3
434,510 - BWI76_RS02105 0.23 +0.3
434,600 + BWI76_RS02105 0.30 +0.8
434,608 - BWI76_RS02105 0.31 -1.9
434,848 + BWI76_RS02105 0.49 +1.3
434,848 + BWI76_RS02105 0.49 +0.4
434,948 + BWI76_RS02105 0.57 +1.3
435,076 + BWI76_RS02105 0.66 +0.4

Or see this region's nucleotide sequence