Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22175 and BPHYT_RS22180 are separated by 27 nucleotides BPHYT_RS22180 and BPHYT_RS22185 are separated by 56 nucleotides BPHYT_RS22185 and BPHYT_RS22190 are separated by 603 nucleotides
BPHYT_RS22175: BPHYT_RS22175 - hypothetical protein, at 534,930 to 536,003
_RS22175
BPHYT_RS22180: BPHYT_RS22180 - hypothetical protein, at 536,031 to 536,270
_RS22180
BPHYT_RS22185: BPHYT_RS22185 - hypothetical protein, at 536,327 to 536,617
_RS22185
BPHYT_RS22190: BPHYT_RS22190 - nucleoid-structuring protein H-NS, at 537,221 to 538,072
_RS22190
Position (kb) 536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 535.542 kb on + strand, within BPHYT_RS22175 at 535.543 kb on - strand, within BPHYT_RS22175 at 535.713 kb on - strand, within BPHYT_RS22175 at 535.809 kb on + strand, within BPHYT_RS22175 at 536.173 kb on - strand, within BPHYT_RS22180 at 536.257 kb on + strand at 536.258 kb on - strand at 536.258 kb on - strand at 536.313 kb on + strand at 536.316 kb on - strand at 536.487 kb on + strand, within BPHYT_RS22185 at 536.718 kb on - strand at 536.853 kb on + strand at 536.920 kb on + strand at 536.922 kb on + strand at 536.936 kb on + strand at 537.452 kb on + strand, within BPHYT_RS22190
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 535,542 + BPHYT_RS22175 0.57 +1.1 535,543 - BPHYT_RS22175 0.57 +1.3 535,713 - BPHYT_RS22175 0.73 -4.2 535,809 + BPHYT_RS22175 0.82 +1.0 536,173 - BPHYT_RS22180 0.59 +0.5 536,257 + -1.4 536,258 - +0.1 536,258 - +0.1 536,313 + +2.8 536,316 - +0.4 536,487 + BPHYT_RS22185 0.55 +0.7 536,718 - +0.8 536,853 + -0.9 536,920 + +1.0 536,922 + +1.0 536,936 + +1.3 537,452 + BPHYT_RS22190 0.27 -0.9
Or see this region's nucleotide sequence