Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22125

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22120 and BPHYT_RS22125 are separated by 308 nucleotidesBPHYT_RS22125 and BPHYT_RS22130 are separated by 214 nucleotides BPHYT_RS22120: BPHYT_RS22120 - sulfate transporter, at 520,622 to 522,070 _RS22120 BPHYT_RS22125: BPHYT_RS22125 - hypothetical protein, at 522,379 to 522,969 _RS22125 BPHYT_RS22130: BPHYT_RS22130 - FAD-linked oxidase, at 523,184 to 524,572 _RS22130 Position (kb) 522 523Strain fitness (log2 ratio) -1 0 1 2 3at 521.835 kb on + strand, within BPHYT_RS22120at 521.958 kb on + strandat 522.657 kb on - strand, within BPHYT_RS22125at 522.657 kb on - strand, within BPHYT_RS22125at 522.659 kb on + strand, within BPHYT_RS22125at 523.267 kb on - strandat 523.662 kb on + strand, within BPHYT_RS22130at 523.663 kb on - strand, within BPHYT_RS22130at 523.753 kb on - strand, within BPHYT_RS22130at 523.878 kb on + strand, within BPHYT_RS22130at 523.878 kb on + strand, within BPHYT_RS22130at 523.933 kb on - strand, within BPHYT_RS22130

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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521,835 + BPHYT_RS22120 0.84 +0.2
521,958 + +0.7
522,657 - BPHYT_RS22125 0.47 +0.1
522,657 - BPHYT_RS22125 0.47 +3.2
522,659 + BPHYT_RS22125 0.47 +0.4
523,267 - -0.5
523,662 + BPHYT_RS22130 0.34 +1.0
523,663 - BPHYT_RS22130 0.34 -0.8
523,753 - BPHYT_RS22130 0.41 -0.0
523,878 + BPHYT_RS22130 0.50 -0.2
523,878 + BPHYT_RS22130 0.50 +0.4
523,933 - BPHYT_RS22130 0.54 -1.6

Or see this region's nucleotide sequence