Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21465 and BPHYT_RS21470 are separated by 385 nucleotides BPHYT_RS21470 and BPHYT_RS21475 are separated by 52 nucleotides BPHYT_RS21475 and BPHYT_RS21480 overlap by 25 nucleotides
BPHYT_RS21465: BPHYT_RS21465 - TetR family transcriptional regulator, at 375,588 to 376,316
_RS21465
BPHYT_RS21470: BPHYT_RS21470 - 6-hydroxynicotinate reductase, at 376,702 to 378,306
_RS21470
BPHYT_RS21475: BPHYT_RS21475 - hypothetical protein, at 378,359 to 379,297
_RS21475
BPHYT_RS21480: BPHYT_RS21480 - hypothetical protein, at 379,273 to 379,863
_RS21480
Position (kb) 376
377
378
379 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 375.763 kb on + strand, within BPHYT_RS21465 at 375.784 kb on + strand, within BPHYT_RS21465 at 375.992 kb on - strand, within BPHYT_RS21465 at 376.087 kb on + strand, within BPHYT_RS21465 at 376.141 kb on + strand, within BPHYT_RS21465 at 376.178 kb on + strand, within BPHYT_RS21465 at 376.201 kb on + strand, within BPHYT_RS21465 at 376.449 kb on - strand at 376.465 kb on - strand at 376.571 kb on - strand at 376.714 kb on - strand at 376.859 kb on + strand at 377.070 kb on + strand, within BPHYT_RS21470 at 377.164 kb on + strand, within BPHYT_RS21470 at 378.022 kb on + strand, within BPHYT_RS21470 at 378.219 kb on + strand at 378.246 kb on + strand at 378.598 kb on + strand, within BPHYT_RS21475 at 378.599 kb on - strand, within BPHYT_RS21475 at 378.599 kb on - strand, within BPHYT_RS21475 at 378.632 kb on + strand, within BPHYT_RS21475 at 378.633 kb on - strand, within BPHYT_RS21475 at 378.746 kb on + strand, within BPHYT_RS21475
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 375,763 + BPHYT_RS21465 0.24 +0.0 375,784 + BPHYT_RS21465 0.27 +0.8 375,992 - BPHYT_RS21465 0.55 +2.3 376,087 + BPHYT_RS21465 0.68 +2.4 376,141 + BPHYT_RS21465 0.76 +1.8 376,178 + BPHYT_RS21465 0.81 -0.8 376,201 + BPHYT_RS21465 0.84 +1.0 376,449 - -1.8 376,465 - -0.6 376,571 - -2.5 376,714 - -0.0 376,859 + +0.4 377,070 + BPHYT_RS21470 0.23 -3.8 377,164 + BPHYT_RS21470 0.29 -0.3 378,022 + BPHYT_RS21470 0.82 -1.0 378,219 + +0.0 378,246 + -1.6 378,598 + BPHYT_RS21475 0.25 +2.1 378,599 - BPHYT_RS21475 0.26 +0.2 378,599 - BPHYT_RS21475 0.26 +2.2 378,632 + BPHYT_RS21475 0.29 -0.3 378,633 - BPHYT_RS21475 0.29 -0.8 378,746 + BPHYT_RS21475 0.41 +0.5
Or see this region's nucleotide sequence