Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21075

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21070 and BPHYT_RS21075 are separated by 101 nucleotidesBPHYT_RS21075 and BPHYT_RS21080 are separated by 132 nucleotides BPHYT_RS21070: BPHYT_RS21070 - ferredoxin, at 288,148 to 289,092 _RS21070 BPHYT_RS21075: BPHYT_RS21075 - (2Fe-2S)-binding protein, at 289,194 to 290,252 _RS21075 BPHYT_RS21080: BPHYT_RS21080 - (2Fe-2S)-binding protein, at 290,385 to 291,500 _RS21080 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 288.415 kb on + strandat 288.602 kb on - strand, within BPHYT_RS21070at 288.703 kb on + strand, within BPHYT_RS21070at 289.086 kb on + strandat 289.089 kb on - strandat 289.545 kb on + strand, within BPHYT_RS21075at 289.903 kb on - strand, within BPHYT_RS21075at 289.963 kb on - strand, within BPHYT_RS21075at 290.351 kb on - strandat 290.402 kb on - strandat 290.499 kb on + strand, within BPHYT_RS21080at 290.764 kb on + strand, within BPHYT_RS21080at 290.862 kb on + strand, within BPHYT_RS21080at 290.923 kb on - strand, within BPHYT_RS21080

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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288,415 + +0.8
288,602 - BPHYT_RS21070 0.48 +3.1
288,703 + BPHYT_RS21070 0.59 -0.3
289,086 + -0.3
289,089 - +0.3
289,545 + BPHYT_RS21075 0.33 -1.9
289,903 - BPHYT_RS21075 0.67 +1.5
289,963 - BPHYT_RS21075 0.73 +1.1
290,351 - +0.9
290,402 - -2.1
290,499 + BPHYT_RS21080 0.10 +0.2
290,764 + BPHYT_RS21080 0.34 -1.0
290,862 + BPHYT_RS21080 0.43 -0.1
290,923 - BPHYT_RS21080 0.48 -2.0

Or see this region's nucleotide sequence