Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20320 and BPHYT_RS20325 are separated by 8 nucleotides BPHYT_RS20325 and BPHYT_RS20330 are separated by 266 nucleotides
BPHYT_RS20320: BPHYT_RS20320 - CoA-binding protein, at 120,741 to 122,909
_RS20320
BPHYT_RS20325: BPHYT_RS20325 - acyl-CoA dehydrogenase, at 122,918 to 124,084
_RS20325
BPHYT_RS20330: BPHYT_RS20330 - IclR family transcriptional regulator, at 124,351 to 125,130
_RS20330
Position (kb) 122
123
124
125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 122.236 kb on + strand, within BPHYT_RS20320 at 122.423 kb on - strand, within BPHYT_RS20320 at 122.471 kb on + strand, within BPHYT_RS20320 at 122.588 kb on + strand, within BPHYT_RS20320 at 122.738 kb on - strand at 122.783 kb on + strand at 123.027 kb on + strand at 123.028 kb on - strand at 123.235 kb on - strand, within BPHYT_RS20325 at 123.365 kb on + strand, within BPHYT_RS20325 at 123.366 kb on - strand, within BPHYT_RS20325 at 123.529 kb on + strand, within BPHYT_RS20325 at 123.530 kb on - strand, within BPHYT_RS20325 at 123.676 kb on - strand, within BPHYT_RS20325 at 123.676 kb on - strand, within BPHYT_RS20325 at 124.008 kb on - strand at 124.141 kb on - strand at 124.141 kb on - strand at 124.177 kb on - strand at 124.504 kb on - strand, within BPHYT_RS20330 at 124.507 kb on + strand, within BPHYT_RS20330 at 124.508 kb on - strand, within BPHYT_RS20330 at 124.508 kb on - strand, within BPHYT_RS20330 at 124.552 kb on - strand, within BPHYT_RS20330 at 124.708 kb on + strand, within BPHYT_RS20330 at 124.731 kb on + strand, within BPHYT_RS20330 at 124.896 kb on - strand, within BPHYT_RS20330 at 124.919 kb on - strand, within BPHYT_RS20330 at 124.942 kb on + strand, within BPHYT_RS20330 at 125.038 kb on + strand, within BPHYT_RS20330
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 122,236 + BPHYT_RS20320 0.69 -1.8 122,423 - BPHYT_RS20320 0.78 +0.8 122,471 + BPHYT_RS20320 0.80 -1.1 122,588 + BPHYT_RS20320 0.85 +0.5 122,738 - +0.5 122,783 + +0.4 123,027 + -4.0 123,028 - +0.4 123,235 - BPHYT_RS20325 0.27 -3.8 123,365 + BPHYT_RS20325 0.38 -1.7 123,366 - BPHYT_RS20325 0.38 -2.6 123,529 + BPHYT_RS20325 0.52 +0.3 123,530 - BPHYT_RS20325 0.52 +0.8 123,676 - BPHYT_RS20325 0.65 -2.0 123,676 - BPHYT_RS20325 0.65 -3.5 124,008 - +1.7 124,141 - -0.5 124,141 - -2.1 124,177 - +0.2 124,504 - BPHYT_RS20330 0.20 -3.2 124,507 + BPHYT_RS20330 0.20 +0.5 124,508 - BPHYT_RS20330 0.20 -0.3 124,508 - BPHYT_RS20330 0.20 +1.0 124,552 - BPHYT_RS20330 0.26 -0.0 124,708 + BPHYT_RS20330 0.46 +0.8 124,731 + BPHYT_RS20330 0.49 -0.5 124,896 - BPHYT_RS20330 0.70 -3.2 124,919 - BPHYT_RS20330 0.73 +1.1 124,942 + BPHYT_RS20330 0.76 +0.5 125,038 + BPHYT_RS20330 0.88 -3.6
Or see this region's nucleotide sequence