Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07780

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07775 and BPHYT_RS07780 are separated by 76 nucleotidesBPHYT_RS07780 and BPHYT_RS07785 are separated by 3 nucleotides BPHYT_RS07775: BPHYT_RS07775 - transposase, at 1,769,817 to 1,771,094 _RS07775 BPHYT_RS07780: BPHYT_RS07780 - nodulation protein, at 1,771,171 to 1,774,494 _RS07780 BPHYT_RS07785: BPHYT_RS07785 - multidrug transporter, at 1,774,498 to 1,777,632 _RS07785 Position (kb) 1771 1772 1773 1774 1775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1771.238 kb on + strandat 1771.262 kb on + strandat 1771.632 kb on + strand, within BPHYT_RS07780at 1771.634 kb on + strand, within BPHYT_RS07780at 1771.634 kb on + strand, within BPHYT_RS07780at 1771.634 kb on + strand, within BPHYT_RS07780at 1771.635 kb on - strand, within BPHYT_RS07780at 1771.635 kb on - strand, within BPHYT_RS07780at 1771.643 kb on + strand, within BPHYT_RS07780at 1771.663 kb on - strandat 1771.663 kb on - strand, within BPHYT_RS07780at 1771.665 kb on - strand, within BPHYT_RS07780at 1771.790 kb on + strand, within BPHYT_RS07780at 1772.189 kb on + strand, within BPHYT_RS07780at 1772.189 kb on + strand, within BPHYT_RS07780at 1772.271 kb on - strand, within BPHYT_RS07780at 1772.271 kb on - strand, within BPHYT_RS07780at 1772.306 kb on + strand, within BPHYT_RS07780at 1772.307 kb on - strand, within BPHYT_RS07780at 1772.468 kb on + strand, within BPHYT_RS07780at 1772.469 kb on - strand, within BPHYT_RS07780at 1772.858 kb on + strand, within BPHYT_RS07780at 1772.858 kb on + strand, within BPHYT_RS07780at 1772.859 kb on - strandat 1773.160 kb on + strandat 1773.362 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.772 kb on - strand, within BPHYT_RS07780at 1773.774 kb on - strand, within BPHYT_RS07780at 1773.940 kb on + strand, within BPHYT_RS07780at 1774.031 kb on + strand, within BPHYT_RS07780at 1774.032 kb on - strand, within BPHYT_RS07780at 1774.109 kb on + strand, within BPHYT_RS07780at 1774.120 kb on - strand, within BPHYT_RS07780at 1774.598 kb on + strandat 1774.765 kb on + strandat 1774.766 kb on - strandat 1774.781 kb on + strandat 1775.000 kb on + strand, within BPHYT_RS07785at 1775.019 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.022 kb on - strand, within BPHYT_RS07785at 1775.022 kb on - strand, within BPHYT_RS07785at 1775.318 kb on + strand, within BPHYT_RS07785at 1775.319 kb on - strand, within BPHYT_RS07785at 1775.343 kb on - strand, within BPHYT_RS07785at 1775.381 kb on + strand, within BPHYT_RS07785at 1775.446 kb on - strand, within BPHYT_RS07785

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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1,771,238 + -0.0
1,771,262 + +0.6
1,771,632 + BPHYT_RS07780 0.14 +0.1
1,771,634 + BPHYT_RS07780 0.14 +0.3
1,771,634 + BPHYT_RS07780 0.14 +0.2
1,771,634 + BPHYT_RS07780 0.14 +0.7
1,771,635 - BPHYT_RS07780 0.14 -2.6
1,771,635 - BPHYT_RS07780 0.14 -2.7
1,771,643 + BPHYT_RS07780 0.14 -1.1
1,771,663 - -2.4
1,771,663 - BPHYT_RS07780 0.15 -0.3
1,771,665 - BPHYT_RS07780 0.15 -0.5
1,771,790 + BPHYT_RS07780 0.19 +0.2
1,772,189 + BPHYT_RS07780 0.31 +0.9
1,772,189 + BPHYT_RS07780 0.31 -1.4
1,772,271 - BPHYT_RS07780 0.33 -0.2
1,772,271 - BPHYT_RS07780 0.33 +2.3
1,772,306 + BPHYT_RS07780 0.34 +0.2
1,772,307 - BPHYT_RS07780 0.34 +1.1
1,772,468 + BPHYT_RS07780 0.39 -0.4
1,772,469 - BPHYT_RS07780 0.39 +0.5
1,772,858 + BPHYT_RS07780 0.51 +0.9
1,772,858 + BPHYT_RS07780 0.51 +1.8
1,772,859 - +2.4
1,773,160 + +1.4
1,773,362 + BPHYT_RS07780 0.66 +0.8
1,773,771 + BPHYT_RS07780 0.78 -1.8
1,773,771 + BPHYT_RS07780 0.78 -3.1
1,773,771 + BPHYT_RS07780 0.78 -0.8
1,773,771 + BPHYT_RS07780 0.78 +0.5
1,773,772 - BPHYT_RS07780 0.78 -0.4
1,773,774 - BPHYT_RS07780 0.78 -0.2
1,773,940 + BPHYT_RS07780 0.83 -0.1
1,774,031 + BPHYT_RS07780 0.86 +0.7
1,774,032 - BPHYT_RS07780 0.86 -3.1
1,774,109 + BPHYT_RS07780 0.88 -1.3
1,774,120 - BPHYT_RS07780 0.89 +0.7
1,774,598 + +0.3
1,774,765 + +0.3
1,774,766 - +0.6
1,774,781 + -3.6
1,775,000 + BPHYT_RS07785 0.16 +1.5
1,775,019 + BPHYT_RS07785 0.17 -0.1
1,775,021 + BPHYT_RS07785 0.17 +0.1
1,775,021 + BPHYT_RS07785 0.17 +0.3
1,775,021 + BPHYT_RS07785 0.17 -0.6
1,775,021 + BPHYT_RS07785 0.17 -1.2
1,775,021 + BPHYT_RS07785 0.17 -1.9
1,775,022 - BPHYT_RS07785 0.17 -0.4
1,775,022 - BPHYT_RS07785 0.17 -1.4
1,775,318 + BPHYT_RS07785 0.26 +0.1
1,775,319 - BPHYT_RS07785 0.26 +0.7
1,775,343 - BPHYT_RS07785 0.27 +0.5
1,775,381 + BPHYT_RS07785 0.28 +1.0
1,775,446 - BPHYT_RS07785 0.30 -0.1

Or see this region's nucleotide sequence