Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07060

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07055 and BPHYT_RS07060 are separated by 109 nucleotidesBPHYT_RS07060 and BPHYT_RS07065 are separated by 48 nucleotidesBPHYT_RS07065 and BPHYT_RS07070 are separated by 162 nucleotides BPHYT_RS07055: BPHYT_RS07055 - sulfotransferase, at 1,595,113 to 1,596,837 _RS07055 BPHYT_RS07060: BPHYT_RS07060 - aldo/keto reductase, at 1,596,947 to 1,597,972 _RS07060 BPHYT_RS07065: BPHYT_RS07065 - 3-ketoacyl-ACP reductase, at 1,598,021 to 1,598,764 _RS07065 BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838 _RS07070 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1596.277 kb on + strand, within BPHYT_RS07055at 1596.544 kb on + strand, within BPHYT_RS07055at 1596.714 kb on + strandat 1596.715 kb on - strandat 1596.901 kb on - strandat 1597.130 kb on + strand, within BPHYT_RS07060at 1597.307 kb on + strand, within BPHYT_RS07060at 1597.401 kb on + strand, within BPHYT_RS07060at 1597.503 kb on - strand, within BPHYT_RS07060at 1597.658 kb on - strand, within BPHYT_RS07060at 1598.132 kb on + strand, within BPHYT_RS07065at 1598.132 kb on + strand, within BPHYT_RS07065at 1598.132 kb on + strand, within BPHYT_RS07065at 1598.310 kb on + strand, within BPHYT_RS07065at 1598.336 kb on - strand, within BPHYT_RS07065at 1598.439 kb on + strand, within BPHYT_RS07065at 1598.439 kb on + strand, within BPHYT_RS07065at 1598.653 kb on - strand, within BPHYT_RS07065at 1598.653 kb on - strand, within BPHYT_RS07065

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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1,596,277 + BPHYT_RS07055 0.67 -1.4
1,596,544 + BPHYT_RS07055 0.83 -3.8
1,596,714 + -0.6
1,596,715 - -3.1
1,596,901 - -0.4
1,597,130 + BPHYT_RS07060 0.18 +0.6
1,597,307 + BPHYT_RS07060 0.35 +2.3
1,597,401 + BPHYT_RS07060 0.44 +0.5
1,597,503 - BPHYT_RS07060 0.54 -0.7
1,597,658 - BPHYT_RS07060 0.69 +4.1
1,598,132 + BPHYT_RS07065 0.15 +1.2
1,598,132 + BPHYT_RS07065 0.15 +1.9
1,598,132 + BPHYT_RS07065 0.15 +0.7
1,598,310 + BPHYT_RS07065 0.39 +1.0
1,598,336 - BPHYT_RS07065 0.42 +0.8
1,598,439 + BPHYT_RS07065 0.56 -0.4
1,598,439 + BPHYT_RS07065 0.56 +1.8
1,598,653 - BPHYT_RS07065 0.85 +0.6
1,598,653 - BPHYT_RS07065 0.85 -0.3

Or see this region's nucleotide sequence