Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04790

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04785 and BPHYT_RS04790 are separated by 3 nucleotidesBPHYT_RS04790 and BPHYT_RS04795 are separated by 137 nucleotides BPHYT_RS04785: BPHYT_RS04785 - permease, at 1,103,839 to 1,104,987 _RS04785 BPHYT_RS04790: BPHYT_RS04790 - permease, at 1,104,991 to 1,106,088 _RS04790 BPHYT_RS04795: BPHYT_RS04795 - cytosol aminopeptidase, at 1,106,226 to 1,107,752 _RS04795 Position (kb) 1104 1105 1106 1107Strain fitness (log2 ratio) -1 0 1at 1106.661 kb on + strand, within BPHYT_RS04795at 1107.001 kb on - strand, within BPHYT_RS04795

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
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1,106,661 + BPHYT_RS04795 0.28 -0.2
1,107,001 - BPHYT_RS04795 0.51 -1.4

Or see this region's nucleotide sequence