Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01610 and BPHYT_RS01615 are separated by 669 nucleotides BPHYT_RS01615 and BPHYT_RS01620 are separated by 134 nucleotides
BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688
_RS01610
BPHYT_RS01615: BPHYT_RS01615 - hypothetical protein, at 366,358 to 367,995
_RS01615
BPHYT_RS01620: BPHYT_RS01620 - sensor histidine kinase, at 368,130 to 369,440
_RS01620
Position (kb) 366
367
368 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 365.716 kb on - strand at 366.097 kb on + strand at 366.286 kb on + strand at 366.286 kb on + strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.305 kb on - strand at 366.307 kb on + strand at 366.585 kb on + strand, within BPHYT_RS01615 at 366.585 kb on + strand, within BPHYT_RS01615 at 366.622 kb on - strand, within BPHYT_RS01615 at 366.719 kb on + strand, within BPHYT_RS01615 at 366.719 kb on + strand, within BPHYT_RS01615 at 366.897 kb on - strand, within BPHYT_RS01615 at 367.039 kb on - strand, within BPHYT_RS01615 at 367.121 kb on + strand, within BPHYT_RS01615 at 367.323 kb on + strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.421 kb on + strand, within BPHYT_RS01615 at 367.421 kb on + strand, within BPHYT_RS01615 at 367.422 kb on - strand, within BPHYT_RS01615 at 367.422 kb on - strand, within BPHYT_RS01615 at 367.512 kb on - strand, within BPHYT_RS01615 at 367.724 kb on + strand, within BPHYT_RS01615 at 367.990 kb on + strand at 367.991 kb on - strand at 368.090 kb on - strand at 368.100 kb on - strand at 368.365 kb on + strand, within BPHYT_RS01620 at 368.365 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.584 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.784 kb on - strand, within BPHYT_RS01620 at 368.847 kb on + strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.849 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 365,716 - -3.1 366,097 + -1.2 366,286 + +0.8 366,286 + +0.5 366,287 - -0.3 366,287 - +0.5 366,287 - -1.2 366,304 + +0.2 366,304 + +1.0 366,304 + -0.7 366,305 - -0.6 366,307 + +0.9 366,585 + BPHYT_RS01615 0.14 -0.3 366,585 + BPHYT_RS01615 0.14 -0.3 366,622 - BPHYT_RS01615 0.16 +0.9 366,719 + BPHYT_RS01615 0.22 +4.0 366,719 + BPHYT_RS01615 0.22 +1.2 366,897 - BPHYT_RS01615 0.33 -2.0 367,039 - BPHYT_RS01615 0.42 +0.9 367,121 + BPHYT_RS01615 0.47 -2.2 367,323 + BPHYT_RS01615 0.59 +1.4 367,324 - BPHYT_RS01615 0.59 +2.8 367,324 - BPHYT_RS01615 0.59 -1.2 367,324 - BPHYT_RS01615 0.59 +1.5 367,324 - BPHYT_RS01615 0.59 +0.0 367,421 + BPHYT_RS01615 0.65 +0.4 367,421 + BPHYT_RS01615 0.65 -1.0 367,422 - BPHYT_RS01615 0.65 +0.2 367,422 - BPHYT_RS01615 0.65 +0.2 367,512 - BPHYT_RS01615 0.70 +0.7 367,724 + BPHYT_RS01615 0.83 +0.8 367,990 + -0.6 367,991 - -0.6 368,090 - -0.8 368,100 - +0.7 368,365 + BPHYT_RS01620 0.18 -0.9 368,365 + BPHYT_RS01620 0.18 -4.5 368,439 + BPHYT_RS01620 0.24 -1.1 368,439 + BPHYT_RS01620 0.24 -3.7 368,439 + BPHYT_RS01620 0.24 -3.5 368,439 + BPHYT_RS01620 0.24 +0.1 368,439 + BPHYT_RS01620 0.24 -2.2 368,584 - BPHYT_RS01620 0.35 -3.6 368,672 - BPHYT_RS01620 0.41 -0.6 368,672 - BPHYT_RS01620 0.41 -0.6 368,672 - BPHYT_RS01620 0.41 -1.8 368,784 - BPHYT_RS01620 0.50 -0.4 368,847 + BPHYT_RS01620 0.55 -0.1 368,848 - BPHYT_RS01620 0.55 +0.4 368,848 - BPHYT_RS01620 0.55 -0.8 368,848 - BPHYT_RS01620 0.55 -0.8 368,849 + BPHYT_RS01620 0.55 +0.1 368,891 + BPHYT_RS01620 0.58 -1.9 368,891 + BPHYT_RS01620 0.58 -2.4 368,892 - BPHYT_RS01620 0.58 -1.8 368,892 - BPHYT_RS01620 0.58 -2.4
Or see this region's nucleotide sequence