Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01350 and BPHYT_RS01355 are separated by 7 nucleotides BPHYT_RS01355 and BPHYT_RS01360 are separated by 863 nucleotides
BPHYT_RS01350: BPHYT_RS01350 - MFS transporter permease, at 308,361 to 309,623
_RS01350
BPHYT_RS01355: BPHYT_RS01355 - hypothetical protein, at 309,631 to 309,993
_RS01355
BPHYT_RS01360: BPHYT_RS01360 - hypothetical protein, at 310,857 to 311,438
_RS01360
Position (kb) 309
310 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 308.647 kb on - strand, within BPHYT_RS01350 at 309.066 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.228 kb on + strand, within BPHYT_RS01350 at 309.366 kb on - strand, within BPHYT_RS01350 at 309.366 kb on - strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.447 kb on - strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.489 kb on - strand, within BPHYT_RS01350 at 309.696 kb on + strand, within BPHYT_RS01355 at 309.697 kb on - strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.701 kb on - strand, within BPHYT_RS01355 at 309.701 kb on - strand, within BPHYT_RS01355 at 309.716 kb on + strand, within BPHYT_RS01355 at 309.779 kb on - strand, within BPHYT_RS01355 at 309.826 kb on + strand, within BPHYT_RS01355 at 309.827 kb on - strand, within BPHYT_RS01355 at 309.827 kb on - strand, within BPHYT_RS01355 at 309.831 kb on - strand, within BPHYT_RS01355 at 309.831 kb on - strand, within BPHYT_RS01355 at 309.842 kb on - strand, within BPHYT_RS01355 at 309.842 kb on - strand, within BPHYT_RS01355 at 309.853 kb on + strand, within BPHYT_RS01355 at 309.965 kb on + strand at 309.965 kb on + strand at 309.965 kb on + strand at 309.991 kb on + strand at 310.045 kb on + strand at 310.045 kb on + strand at 310.046 kb on - strand at 310.046 kb on - strand at 310.080 kb on + strand at 310.155 kb on + strand at 310.155 kb on + strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.306 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.374 kb on - strand at 310.374 kb on - strand at 310.400 kb on - strand at 310.435 kb on - strand at 310.465 kb on - strand at 310.465 kb on - strand at 310.525 kb on + strand at 310.525 kb on + strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.529 kb on + strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.554 kb on - strand at 310.560 kb on + strand at 310.560 kb on + strand at 310.561 kb on - strand at 310.561 kb on - strand at 310.742 kb on + strand at 310.776 kb on + strand at 310.776 kb on + strand at 310.783 kb on - strand at 310.790 kb on + strand at 310.825 kb on + strand at 310.825 kb on + strand at 310.837 kb on + strand at 310.838 kb on - strand at 310.838 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 308,647 - BPHYT_RS01350 0.23 -0.4 309,066 + BPHYT_RS01350 0.56 -3.8 309,192 + BPHYT_RS01350 0.66 -0.4 309,192 + BPHYT_RS01350 0.66 -0.9 309,192 + BPHYT_RS01350 0.66 -2.9 309,193 - BPHYT_RS01350 0.66 +0.3 309,193 - BPHYT_RS01350 0.66 -0.7 309,193 - BPHYT_RS01350 0.66 +1.3 309,193 - BPHYT_RS01350 0.66 +0.4 309,228 + BPHYT_RS01350 0.69 -0.1 309,366 - BPHYT_RS01350 0.80 -1.0 309,366 - BPHYT_RS01350 0.80 +0.0 309,387 + BPHYT_RS01350 0.81 +0.3 309,387 + BPHYT_RS01350 0.81 -0.6 309,387 + BPHYT_RS01350 0.81 -2.1 309,447 - BPHYT_RS01350 0.86 +1.5 309,462 + BPHYT_RS01350 0.87 -0.2 309,462 + BPHYT_RS01350 0.87 -0.3 309,462 + BPHYT_RS01350 0.87 -0.0 309,462 + BPHYT_RS01350 0.87 +0.3 309,463 - BPHYT_RS01350 0.87 -0.4 309,463 - BPHYT_RS01350 0.87 +2.9 309,463 - BPHYT_RS01350 0.87 +0.8 309,489 - BPHYT_RS01350 0.89 -2.2 309,696 + BPHYT_RS01355 0.18 +1.0 309,697 - BPHYT_RS01355 0.18 -1.1 309,700 + BPHYT_RS01355 0.19 -2.0 309,700 + BPHYT_RS01355 0.19 -1.0 309,700 + BPHYT_RS01355 0.19 -0.1 309,701 - BPHYT_RS01355 0.19 -1.5 309,701 - BPHYT_RS01355 0.19 +0.3 309,716 + BPHYT_RS01355 0.23 -2.0 309,779 - BPHYT_RS01355 0.41 +0.3 309,826 + BPHYT_RS01355 0.54 -0.5 309,827 - BPHYT_RS01355 0.54 -0.6 309,827 - BPHYT_RS01355 0.54 -0.0 309,831 - BPHYT_RS01355 0.55 +0.6 309,831 - BPHYT_RS01355 0.55 -0.8 309,842 - BPHYT_RS01355 0.58 -0.6 309,842 - BPHYT_RS01355 0.58 +0.7 309,853 + BPHYT_RS01355 0.61 -2.7 309,965 + +0.7 309,965 + -1.6 309,965 + +3.3 309,991 + -0.9 310,045 + +0.2 310,045 + -3.5 310,046 - -2.4 310,046 - -3.4 310,080 + -1.6 310,155 + -0.5 310,155 + -2.2 310,156 - +2.7 310,156 - -2.8 310,156 - -2.7 310,306 + -0.1 310,353 + -2.3 310,353 + +0.4 310,353 + +0.9 310,374 - +0.8 310,374 - +0.0 310,400 - -0.1 310,435 - -0.7 310,465 - -0.0 310,465 - +0.3 310,525 + +0.4 310,525 + -2.8 310,526 - -0.4 310,526 - +0.5 310,526 - +0.3 310,529 + +0.7 310,530 - +1.0 310,530 - +0.1 310,530 - -2.8 310,554 - +0.3 310,560 + +0.6 310,560 + -0.7 310,561 - +0.0 310,561 - -1.1 310,742 + -2.3 310,776 + -0.0 310,776 + -0.7 310,783 - -0.2 310,790 + +0.5 310,825 + +1.4 310,825 + +0.0 310,837 + +0.2 310,838 - +0.3 310,838 - +0.2 310,881 - -0.5 310,881 - -0.5 310,881 - +0.0
Or see this region's nucleotide sequence