Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00160 and BPHYT_RS00165 are separated by 131 nucleotides BPHYT_RS00165 and BPHYT_RS00170 are separated by 22 nucleotides
BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049
_RS00160
BPHYT_RS00165: BPHYT_RS00165 - AraC family transcriptional regulator, at 44,181 to 45,026
_RS00165
BPHYT_RS00170: BPHYT_RS00170 - lysine transporter LysE, at 45,049 to 45,636
_RS00170
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.185 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.456 kb on - strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 44.047 kb on + strand at 44.048 kb on - strand at 44.048 kb on - strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.129 kb on + strand at 44.130 kb on - strand at 44.133 kb on + strand at 44.155 kb on + strand at 44.163 kb on + strand at 44.178 kb on + strand at 44.302 kb on - strand, within BPHYT_RS00165 at 44.362 kb on - strand, within BPHYT_RS00165 at 44.847 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 45.016 kb on - strand at 45.065 kb on + strand at 45.200 kb on + strand, within BPHYT_RS00170 at 45.201 kb on - strand, within BPHYT_RS00170 at 45.315 kb on - strand, within BPHYT_RS00170 at 45.380 kb on + strand, within BPHYT_RS00170 at 45.390 kb on - strand, within BPHYT_RS00170 at 45.571 kb on - strand at 45.571 kb on - strand, within BPHYT_RS00170 at 45.625 kb on + strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.650 kb on - strand at 45.706 kb on - strand at 45.706 kb on - strand at 45.855 kb on - strand at 45.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 43,185 + -3.4 43,185 + +0.8 43,185 + -1.8 43,456 - BPHYT_RS00160 0.25 -2.2 43,768 + BPHYT_RS00160 0.64 +0.3 43,768 + BPHYT_RS00160 0.64 +2.5 44,047 + +0.4 44,048 - +1.1 44,048 - +0.0 44,059 + -1.4 44,059 + -2.0 44,129 + +0.1 44,130 - +1.4 44,133 + -0.3 44,155 + -1.2 44,163 + -1.5 44,178 + +0.4 44,302 - BPHYT_RS00165 0.14 -0.2 44,362 - BPHYT_RS00165 0.21 -0.7 44,847 + BPHYT_RS00165 0.79 +0.2 44,868 + BPHYT_RS00165 0.81 -1.1 44,868 + BPHYT_RS00165 0.81 +0.3 44,893 - BPHYT_RS00165 0.84 -3.1 44,893 - BPHYT_RS00165 0.84 +0.0 45,016 - -0.7 45,065 + -0.7 45,200 + BPHYT_RS00170 0.26 +0.2 45,201 - BPHYT_RS00170 0.26 +1.5 45,315 - BPHYT_RS00170 0.45 -1.6 45,380 + BPHYT_RS00170 0.56 +0.5 45,390 - BPHYT_RS00170 0.58 +0.3 45,571 - +1.2 45,571 - BPHYT_RS00170 0.89 -3.2 45,625 + +0.0 45,626 - +1.4 45,626 - +1.0 45,626 - -0.1 45,650 - -1.5 45,706 - +1.1 45,706 - +0.4 45,855 - -1.1 45,995 + +0.6
Or see this region's nucleotide sequence