Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00150 and BPHYT_RS00155 are separated by 302 nucleotides BPHYT_RS00155 and BPHYT_RS00160 are separated by 124 nucleotides
BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679
_RS00150
BPHYT_RS00155: BPHYT_RS00155 - aminotransferase, at 41,982 to 43,136
_RS00155
BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049
_RS00160
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.287 kb on - strand, within BPHYT_RS00150 at 41.575 kb on + strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.733 kb on - strand at 41.740 kb on - strand at 41.902 kb on - strand at 41.975 kb on + strand at 41.981 kb on + strand at 41.982 kb on - strand at 42.022 kb on + strand at 42.228 kb on + strand, within BPHYT_RS00155 at 42.291 kb on + strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.360 kb on + strand, within BPHYT_RS00155 at 42.361 kb on - strand, within BPHYT_RS00155 at 42.591 kb on + strand, within BPHYT_RS00155 at 42.739 kb on + strand, within BPHYT_RS00155 at 42.801 kb on + strand, within BPHYT_RS00155 at 42.838 kb on - strand, within BPHYT_RS00155 at 42.838 kb on - strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 42.858 kb on + strand, within BPHYT_RS00155 at 43.044 kb on - strand at 43.052 kb on + strand at 43.140 kb on + strand at 43.141 kb on - strand at 43.173 kb on + strand at 43.173 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.456 kb on - strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 44.047 kb on + strand at 44.048 kb on - strand at 44.048 kb on - strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.129 kb on + strand at 44.130 kb on - strand at 44.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB remove 41,287 - BPHYT_RS00150 0.72 -2.6 41,575 + -0.3 41,576 - -2.2 41,576 - -0.6 41,576 - -0.7 41,576 - +2.4 41,733 - -1.4 41,740 - -0.0 41,902 - -1.5 41,975 + +0.1 41,981 + +0.6 41,982 - -3.5 42,022 + +0.5 42,228 + BPHYT_RS00155 0.21 -3.4 42,291 + BPHYT_RS00155 0.27 +2.3 42,337 - BPHYT_RS00155 0.31 +0.9 42,337 - BPHYT_RS00155 0.31 +1.2 42,360 + BPHYT_RS00155 0.33 -2.8 42,361 - BPHYT_RS00155 0.33 -0.2 42,591 + BPHYT_RS00155 0.53 -0.1 42,739 + BPHYT_RS00155 0.66 +0.1 42,801 + BPHYT_RS00155 0.71 +1.1 42,838 - BPHYT_RS00155 0.74 +1.1 42,838 - BPHYT_RS00155 0.74 -1.4 42,858 + BPHYT_RS00155 0.76 +1.0 42,858 + BPHYT_RS00155 0.76 -2.3 42,858 + BPHYT_RS00155 0.76 -2.5 43,044 - +0.3 43,052 + +1.3 43,140 + -2.1 43,141 - +2.6 43,173 + +0.6 43,173 + -0.0 43,185 + -3.4 43,185 + +0.8 43,185 + -1.8 43,456 - BPHYT_RS00160 0.25 -2.2 43,768 + BPHYT_RS00160 0.64 +0.3 43,768 + BPHYT_RS00160 0.64 +2.5 44,047 + +0.4 44,048 - +1.1 44,048 - +0.0 44,059 + -1.4 44,059 + -2.0 44,129 + +0.1 44,130 - +1.4 44,133 + -0.3
Or see this region's nucleotide sequence