Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1594

Experiment: BHIS with Simvastatin 30 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1593 and BT1594 overlap by 16 nucleotidesBT1594 and BT1595 are separated by 113 nucleotides BT1593: BT1593 - putative cell-cycle protein (NCBI ptt file), at 1,958,798 to 1,960,078 BT1593 BT1594: BT1594 - putative ferredoxin (NCBI ptt file), at 1,960,063 to 1,961,022 BT1594 BT1595: BT1595 - transcription termination factor rho (NCBI ptt file), at 1,961,136 to 1,963,304 BT1595 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -2 -1 0 1at 1960.071 kb on + strandat 1960.285 kb on + strand, within BT1594at 1960.320 kb on + strand, within BT1594at 1960.407 kb on - strand, within BT1594at 1960.472 kb on + strand, within BT1594at 1960.528 kb on - strand, within BT1594at 1960.528 kb on - strand, within BT1594at 1960.530 kb on - strand, within BT1594at 1960.543 kb on + strand, within BT1594at 1960.742 kb on - strand, within BT1594at 1960.753 kb on - strand, within BT1594at 1960.903 kb on - strand, within BT1594at 1961.083 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Simvastatin 30 uM
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1,960,071 + +0.8
1,960,285 + BT1594 0.23 -1.8
1,960,320 + BT1594 0.27 -0.2
1,960,407 - BT1594 0.36 -0.2
1,960,472 + BT1594 0.43 -0.2
1,960,528 - BT1594 0.48 +0.8
1,960,528 - BT1594 0.48 +0.2
1,960,530 - BT1594 0.49 +0.8
1,960,543 + BT1594 0.50 -2.5
1,960,742 - BT1594 0.71 -0.3
1,960,753 - BT1594 0.72 -0.2
1,960,903 - BT1594 0.88 -1.2
1,961,083 + +0.8

Or see this region's nucleotide sequence