Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25325 and BWI76_RS25330 are separated by 92 nucleotides BWI76_RS25330 and BWI76_RS25335 are separated by 3 nucleotides BWI76_RS25335 and BWI76_RS25340 overlap by 2 nucleotides BWI76_RS25340 and BWI76_RS25345 are separated by 109 nucleotides BWI76_RS25345 and BWI76_RS25350 are separated by 15 nucleotides
BWI76_RS25325: BWI76_RS25325 - hypothetical protein, at 5,267,036 to 5,267,443
_RS25325
BWI76_RS25330: BWI76_RS25330 - stringent starvation protein B, at 5,267,536 to 5,268,024
_RS25330
BWI76_RS25335: BWI76_RS25335 - stringent starvation protein A, at 5,268,028 to 5,268,666
_RS25335
BWI76_RS25340: BWI76_RS25340 - hypothetical protein, at 5,268,665 to 5,268,868
_RS25340
BWI76_RS25345: BWI76_RS25345 - 30S ribosomal protein S9, at 5,268,978 to 5,269,370
_RS25345
BWI76_RS25350: BWI76_RS25350 - 50S ribosomal protein L13, at 5,269,386 to 5,269,814
_RS25350
Position (kb)
5268
5269 Strain fitness (log2 ratio)
-2
-1
0
1 at 5267.041 kb on - strand at 5268.121 kb on - strand, within BWI76_RS25335 at 5268.295 kb on - strand, within BWI76_RS25335 at 5268.320 kb on + strand, within BWI76_RS25335
Per-strain Table
Or see this region's nucleotide sequence