Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18705

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml
3,876,921	-				-0.1
3,877,107	-		BWI76_RS18695	0.48	-0.7
3,877,131	-		BWI76_RS18695	0.52	-2.3
3,877,140	-		BWI76_RS18695	0.53	-1.8
3,877,161	+		BWI76_RS18695	0.56	-1.2
3,877,161	+		BWI76_RS18695	0.56	-1.4
3,877,182	+		BWI76_RS18695	0.59	+0.9
3,877,182	+				+0.9
3,877,182	+		BWI76_RS18695	0.59	-0.9
3,877,317	-		BWI76_RS18695	0.78	-0.1
3,877,492	+				-1.2
3,877,497	+				-0.1
3,877,502	+				-0.0
3,877,502	+				+0.2
3,877,502	+				-0.7
3,877,502	+				-0.9
3,877,502	+				-1.4
3,877,510	-				-1.3
3,877,510	-				-1.4
3,877,510	-				-0.6
3,877,510	-				-0.7
3,877,510	-				+0.3
3,877,535	-				-0.3
3,877,552	+				+0.6
3,877,553	-				+0.1
3,877,556	-				+0.9
3,877,560	+				+0.9
3,877,560	+				+0.6
3,877,567	-				+0.2
3,877,568	-				-0.0
3,877,602	+		BWI76_RS18700	0.14	+0.6
3,877,602	+		BWI76_RS18700	0.14	-0.4
3,877,610	-		BWI76_RS18700	0.17	+0.1
3,877,615	+		BWI76_RS18700	0.18	-1.5
3,877,615	+		BWI76_RS18700	0.18	+0.5
3,877,645	-		BWI76_RS18700	0.27	-0.0
3,877,651	+		BWI76_RS18700	0.29	-1.3
3,877,658	-		BWI76_RS18700	0.31	+1.2
3,877,658	-		BWI76_RS18700	0.31	-0.4
3,877,740	+		BWI76_RS18700	0.55	-0.4
3,877,742	-		BWI76_RS18700	0.56	-0.3
3,877,748	-		BWI76_RS18700	0.58	+0.9
3,877,762	+		BWI76_RS18700	0.62	-0.7
3,877,780	-		BWI76_RS18700	0.67	-1.2
3,877,785	-		BWI76_RS18700	0.68	-1.7
3,877,792	-		BWI76_RS18700	0.71	+0.3
3,877,803	-		BWI76_RS18700	0.74	-1.1
3,877,810	+		BWI76_RS18700	0.76	-2.3
3,877,810	+		BWI76_RS18700	0.76	+1.0
3,877,818	-		BWI76_RS18700	0.78	-1.6
3,877,818	-		BWI76_RS18700	0.78	+0.2
3,877,818	-		BWI76_RS18700	0.78	-0.0
3,877,818	-		BWI76_RS18700	0.78	-0.7
3,877,818	-		BWI76_RS18700	0.78	-0.1
3,877,858	+				+0.3
3,877,865	+				-1.4
3,877,866	-				-1.1
3,877,873	-				-1.4
3,877,873	-				+0.0
3,877,879	-				-0.7
3,877,891	+				+0.5
3,877,894	-				-1.1
3,877,899	+				-0.6
3,877,924	-				-1.0
3,878,023	+		BWI76_RS18705	0.37	+0.5
3,878,031	-		BWI76_RS18705	0.39	+0.1
3,878,038	-		BWI76_RS18705	0.41	-0.2
3,878,040	+		BWI76_RS18705	0.42	+0.2
3,878,045	+		BWI76_RS18705	0.44	-0.7
3,878,048	-		BWI76_RS18705	0.44	+1.2
3,878,048	-		BWI76_RS18705	0.44	-0.4
3,878,048	-		BWI76_RS18705	0.44	-1.0
3,878,048	-		BWI76_RS18705	0.44	-0.4
3,878,048	-		BWI76_RS18705	0.44	-0.5
3,878,048	-		BWI76_RS18705	0.44	-1.4
3,878,048	-		BWI76_RS18705	0.44	-0.9
3,878,048	-		BWI76_RS18705	0.44	-0.1
3,878,050	+		BWI76_RS18705	0.45	-1.4
3,878,050	+		BWI76_RS18705	0.45	+0.7
3,878,050	+		BWI76_RS18705	0.45	+0.5
3,878,050	+		BWI76_RS18705	0.45	+0.7
3,878,050	+		BWI76_RS18705	0.45	-0.2
3,878,050	+		BWI76_RS18705	0.45	+0.3
3,878,053	-		BWI76_RS18705	0.46	-0.7
3,878,055	+		BWI76_RS18705	0.47	-0.7
3,878,058	-		BWI76_RS18705	0.47	+1.0
3,878,058	-		BWI76_RS18705	0.47	+2.9
3,878,058	-		BWI76_RS18705	0.47	+0.8
3,878,058	-		BWI76_RS18705	0.47	+0.4
3,878,094	-		BWI76_RS18705	0.58	-1.1
3,878,103	-		BWI76_RS18705	0.61	-0.1
3,878,110	-		BWI76_RS18705	0.63	-1.3
3,878,149	+		BWI76_RS18705	0.75	+0.4
3,878,157	-		BWI76_RS18705	0.77	-1.4
3,878,157	-		BWI76_RS18705	0.77	+1.0
3,878,174	+		BWI76_RS18705	0.82	-1.1
3,878,182	-		BWI76_RS18705	0.85	-0.1
3,878,188	+		BWI76_RS18705	0.86	-0.2
3,878,191	-		BWI76_RS18705	0.87	-1.1
3,878,194	+		BWI76_RS18705	0.88	-2.4
3,878,194	+		BWI76_RS18705	0.88	-1.3
3,878,202	-				-0.9
3,878,202	-				-0.4
3,878,206	-				+0.5
3,878,243	+				-0.3
3,878,254	+				+0.7
3,878,334	+				+3.5
3,878,341	+				+0.1
3,878,455	+				-0.2
3,878,469	+				-0.7
3,878,486	+				-0.7
3,878,486	+				+0.1
3,878,490	+				+0.9
3,878,494	-				-0.4
3,878,494	-				-0.4
3,878,499	-				+0.2
3,878,499	-				-0.7
3,878,499	-				-0.2
3,878,499	-				+0.5
3,878,499	-				+0.7
3,878,499	-				+0.3
3,878,511	-				+0.4
3,878,533	+				-1.0
3,878,533	+				-1.9
3,878,533	+				-1.1
3,878,533	-				+0.0
3,878,541	-				-0.2
3,878,547	+				-0.8
3,878,555	-				-0.1
3,878,555	-				-0.7
3,878,565	-				+0.3
3,878,565	-				-1.6
3,878,572	+				-1.4
3,878,582	-				-0.5
3,878,586	+				+0.1
3,878,590	+				-0.7
3,878,624	-				+0.3
3,878,655	+		BWI76_RS18710	0.11	+0.0
3,878,673	-		BWI76_RS18710	0.12	-0.8
3,878,681	+		BWI76_RS18710	0.13	-1.3
3,878,689	-		BWI76_RS18710	0.13	-0.3
3,878,695	+		BWI76_RS18710	0.13	-0.5
3,878,729	+		BWI76_RS18710	0.15	+0.4
3,878,737	+		BWI76_RS18710	0.16	-1.1
3,878,737	-		BWI76_RS18710	0.16	-3.2
3,878,763	-		BWI76_RS18710	0.17	-0.6
3,878,764	+		BWI76_RS18710	0.17	-0.2
3,878,772	-		BWI76_RS18710	0.17	+0.0
3,878,810	+		BWI76_RS18710	0.19	-0.2
3,878,815	+		BWI76_RS18710	0.20	-0.5
3,878,823	-		BWI76_RS18710	0.20	-1.4
3,878,838	-		BWI76_RS18710	0.21	-0.7
3,878,888	-		BWI76_RS18710	0.23	+0.1
3,878,898	+		BWI76_RS18710	0.24	+0.2
3,879,207	-		BWI76_RS18710	0.40	-0.2