Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15000

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml
3,141,465	-		BWI76_RS14990	0.63	+0.8
3,141,472	-		BWI76_RS14990	0.64	-0.9
3,141,476	-		BWI76_RS14990	0.64	-1.0
3,141,515	-		BWI76_RS14990	0.69	+0.1
3,141,561	-		BWI76_RS14990	0.75	-0.8
3,141,570	-		BWI76_RS14990	0.77	+0.5
3,141,572	+		BWI76_RS14990	0.77	+0.2
3,141,626	+				+1.9
3,141,626	+		BWI76_RS14990	0.84	+0.0
3,141,626	+		BWI76_RS14990	0.84	+1.2
3,141,634	-		BWI76_RS14990	0.85	+0.3
3,141,634	-		BWI76_RS14990	0.85	+0.0
3,141,634	-		BWI76_RS14990	0.85	-0.3
3,141,634	-		BWI76_RS14990	0.85	+0.3
3,141,634	-		BWI76_RS14990	0.85	-0.6
3,141,634	-		BWI76_RS14990	0.85	-0.0
3,141,634	-		BWI76_RS14990	0.85	-0.1
3,141,634	-		BWI76_RS14990	0.85	+0.8
3,141,634	-		BWI76_RS14990	0.85	+0.5
3,141,634	-		BWI76_RS14990	0.85	-0.7
3,141,634	-		BWI76_RS14990	0.85	-3.1
3,141,634	-		BWI76_RS14990	0.85	+0.4
3,141,634	-		BWI76_RS14990	0.85	+0.4
3,141,634	-		BWI76_RS14990	0.85	-0.1
3,141,634	-		BWI76_RS14990	0.85	+0.0
3,141,634	-		BWI76_RS14990	0.85	+0.3
3,141,636	+		BWI76_RS14990	0.85	-0.4
3,141,639	-		BWI76_RS14990	0.86	-0.5
3,141,644	-		BWI76_RS14990	0.86	-0.8
3,141,644	-		BWI76_RS14990	0.86	-0.4
3,141,644	-		BWI76_RS14990	0.86	-0.7
3,141,644	-		BWI76_RS14990	0.86	-1.5
3,141,644	-		BWI76_RS14990	0.86	+0.5
3,141,644	-		BWI76_RS14990	0.86	+0.6
3,141,646	-		BWI76_RS14990	0.87	-0.1
3,141,654	-				+0.2
3,141,739	-				-1.2
3,141,740	+				+0.8
3,141,758	+				-1.8
3,141,766	-				+0.5
3,141,853	-		BWI76_RS14995	0.14	-1.8
3,141,853	-		BWI76_RS14995	0.14	-1.1
3,141,863	-		BWI76_RS14995	0.15	+0.1
3,141,868	-		BWI76_RS14995	0.16	-0.2
3,141,870	-		BWI76_RS14995	0.16	-0.3
3,141,935	-		BWI76_RS14995	0.26	+0.0
3,141,935	-		BWI76_RS14995	0.26	-2.3
3,142,046	-		BWI76_RS14995	0.42	+0.2
3,142,046	-		BWI76_RS14995	0.42	-2.7
3,142,085	+		BWI76_RS14995	0.47	+3.5
3,142,085	+		BWI76_RS14995	0.47	+2.8
3,142,093	-		BWI76_RS14995	0.48	+1.2
3,142,294	+		BWI76_RS14995	0.77	+0.1
3,142,337	+		BWI76_RS14995	0.83	+0.4
3,142,515	-				+0.9
3,142,515	-				-0.6
3,142,525	-				-0.0
3,142,720	-		BWI76_RS15000	0.35	-0.5
3,142,743	-		BWI76_RS15000	0.38	-0.4
3,142,767	+		BWI76_RS15000	0.41	-0.8
3,142,778	+		BWI76_RS15000	0.43	+1.2
3,142,847	+				-0.4
3,142,852	-		BWI76_RS15000	0.53	-0.4
3,142,922	+		BWI76_RS15000	0.62	-1.7
3,142,995	+		BWI76_RS15000	0.72	+0.4
3,143,003	-				-1.4
3,143,058	+		BWI76_RS15000	0.80	+0.2
3,143,058	+		BWI76_RS15000	0.80	-0.8
3,143,126	+		BWI76_RS15000	0.90	+1.2
3,143,127	+		BWI76_RS15000	0.90	-1.1
3,143,135	-				-1.1
3,143,137	+				-0.7
3,143,212	+				-0.4
3,143,245	-				-0.2
3,143,281	+				-1.8
3,143,287	-				-0.4
3,143,362	+				+0.2
3,143,614	+		BWI76_RS15005	0.36	+1.2
3,143,628	+		BWI76_RS15005	0.43	-1.4
3,143,628	+		BWI76_RS15005	0.43	-2.9
3,143,628	+		BWI76_RS15005	0.43	-0.4
3,143,628	+		BWI76_RS15005	0.43	+0.4
3,143,628	+		BWI76_RS15005	0.43	+1.2
3,143,628	+		BWI76_RS15005	0.43	-1.1
3,143,628	+		BWI76_RS15005	0.43	-2.5
3,143,628	+		BWI76_RS15005	0.43	+0.8
3,143,628	+		BWI76_RS15005	0.43	-0.2
3,143,628	+		BWI76_RS15005	0.43	-0.4
3,143,628	+		BWI76_RS15005	0.43	-0.1
3,143,636	-		BWI76_RS15005	0.47	-0.4
3,143,636	-		BWI76_RS15005	0.47	+0.5
3,143,636	-		BWI76_RS15005	0.47	+0.0
3,143,636	-		BWI76_RS15005	0.47	-0.9
3,143,636	-		BWI76_RS15005	0.47	-0.1
3,143,636	-		BWI76_RS15005	0.47	-0.4
3,143,636	-		BWI76_RS15005	0.47	+0.5
3,143,636	-		BWI76_RS15005	0.47	+0.1
3,143,636	-		BWI76_RS15005	0.47	+0.5
3,143,636	-		BWI76_RS15005	0.47	+1.2
3,143,636	-		BWI76_RS15005	0.47	-0.6
3,143,636	-		BWI76_RS15005	0.47	-0.5
3,143,636	-		BWI76_RS15005	0.47	-0.7
3,143,636	-		BWI76_RS15005	0.47	+0.1
3,143,636	-		BWI76_RS15005	0.47	-0.0
3,143,670	+		BWI76_RS15005	0.63	-0.4
3,143,670	+		BWI76_RS15005	0.63	+0.2
3,143,673	-		BWI76_RS15005	0.64	-0.4
3,143,678	-		BWI76_RS15005	0.67	+0.3
3,143,705	+		BWI76_RS15005	0.80	+0.3
3,143,728	+				+0.1
3,143,728	+				-0.2
3,143,728	+				+1.2
3,143,736	-				+0.8
3,143,736	-				+0.3
3,143,736	-				-1.5
3,143,736	-				+0.7
3,143,838	+		BWI76_RS15010	0.10	+0.3
3,143,848	+		BWI76_RS15010	0.15	+0.2
3,143,848	+		BWI76_RS15010	0.15	-0.9
3,143,848	+		BWI76_RS15010	0.15	+1.0
3,143,848	+		BWI76_RS15010	0.15	-0.9
3,143,848	+		BWI76_RS15010	0.15	-0.5
3,143,864	+		BWI76_RS15010	0.24	+1.2
3,143,864	+		BWI76_RS15010	0.24	+0.2
3,143,888	+		BWI76_RS15010	0.37	+0.2
3,143,888	+		BWI76_RS15010	0.37	-0.7
3,143,890	+		BWI76_RS15010	0.38	-0.1
3,143,890	+		BWI76_RS15010	0.38	-1.5
3,143,890	+		BWI76_RS15010	0.38	-0.2
3,143,898	-		BWI76_RS15010	0.42	-0.9
3,143,898	-		BWI76_RS15010	0.42	+0.6
3,143,905	+		BWI76_RS15010	0.46	+0.1