Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06995

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml
1,468,530	+		BWI76_RS06990	0.48	+0.1
1,468,548	+		BWI76_RS06990	0.49	+1.4
1,468,662	+		BWI76_RS06990	0.55	+0.6
1,468,819	+		BWI76_RS06990	0.64	+1.6
1,468,844	-		BWI76_RS06990	0.66	+0.3
1,468,916	+		BWI76_RS06990	0.70	+0.2
1,469,058	+		BWI76_RS06990	0.78	+0.1
1,469,058	+		BWI76_RS06990	0.78	-0.5
1,469,139	+		BWI76_RS06990	0.82	-0.4
1,469,216	-		BWI76_RS06990	0.86	+0.9
1,469,224	+		BWI76_RS06990	0.87	+0.3
1,469,232	-		BWI76_RS06990	0.87	+0.0
1,469,284	-				-1.2
1,469,376	+				-0.3
1,469,381	+				-0.0
1,469,389	-				-2.7
1,469,389	-				-0.2
1,469,391	-				+1.3
1,469,391	-				+0.2
1,469,409	-				+1.8
1,469,412	-				-2.0
1,469,428	+				-0.1
1,469,518	-				-0.2
1,469,545	+				+0.6
1,469,587	-		BWI76_RS06995	0.15	-0.8
1,469,615	-		BWI76_RS06995	0.19	-2.0
1,469,633	+		BWI76_RS06995	0.21	+0.8
1,469,635	+		BWI76_RS06995	0.21	+0.0
1,469,678	-		BWI76_RS06995	0.27	+1.8
1,469,691	+		BWI76_RS06995	0.28	-2.1
1,469,719	-		BWI76_RS06995	0.32	+0.2
1,469,816	+		BWI76_RS06995	0.44	+0.1
1,469,816	+		BWI76_RS06995	0.44	-0.8
1,469,824	-		BWI76_RS06995	0.45	+0.0
1,469,824	-		BWI76_RS06995	0.45	-0.7
1,469,824	-		BWI76_RS06995	0.45	+0.8
1,469,824	-		BWI76_RS06995	0.45	-1.1
1,469,824	-		BWI76_RS06995	0.45	-0.4
1,469,824	-		BWI76_RS06995	0.45	-1.2
1,469,824	-		BWI76_RS06995	0.45	-0.2
1,469,834	-		BWI76_RS06995	0.47	+0.3
1,469,836	+		BWI76_RS06995	0.47	+0.8
1,469,844	-		BWI76_RS06995	0.48	+1.0
1,469,859	+		BWI76_RS06995	0.50	-0.8
1,469,869	+		BWI76_RS06995	0.51	-0.4
1,469,869	+		BWI76_RS06995	0.51	+0.2
1,469,869	+		BWI76_RS06995	0.51	-2.5
1,469,869	+		BWI76_RS06995	0.51	-0.8
1,469,875	+		BWI76_RS06995	0.52	-1.5
1,469,877	-		BWI76_RS06995	0.52	-1.8
1,469,877	-		BWI76_RS06995	0.52	-0.9
1,469,887	+		BWI76_RS06995	0.54	-0.8
1,469,932	+		BWI76_RS06995	0.59	-1.5
1,469,935	+		BWI76_RS06995	0.60	-2.5
1,469,943	-		BWI76_RS06995	0.61	-0.4
1,469,945	+		BWI76_RS06995	0.61	+0.1
1,469,945	+		BWI76_RS06995	0.61	+0.4
1,469,945	+		BWI76_RS06995	0.61	-1.2
1,469,945	-		BWI76_RS06995	0.61	-0.8
1,469,953	-		BWI76_RS06995	0.62	-0.0
1,469,962	+		BWI76_RS06995	0.63	-1.8
1,469,969	-		BWI76_RS06995	0.64	-0.7
1,469,971	+		BWI76_RS06995	0.64	+0.3
1,469,971	+		BWI76_RS06995	0.64	-0.1
1,469,972	-		BWI76_RS06995	0.64	+0.5
1,469,979	-		BWI76_RS06995	0.65	-2.8
1,469,979	-		BWI76_RS06995	0.65	+0.3
1,469,979	-		BWI76_RS06995	0.65	-0.9
1,469,979	-		BWI76_RS06995	0.65	-0.8
1,470,040	-		BWI76_RS06995	0.73	+0.5
1,470,041	-		BWI76_RS06995	0.73	+0.1
1,470,052	+		BWI76_RS06995	0.75	-1.2
1,470,052	+		BWI76_RS06995	0.75	-0.5
1,470,071	+		BWI76_RS06995	0.77	-0.2
1,470,082	+		BWI76_RS06995	0.79	-1.7
1,470,101	-		BWI76_RS06995	0.81	+0.8
1,470,102	-		BWI76_RS06995	0.81	+0.4
1,470,109	+		BWI76_RS06995	0.82	-0.7
1,470,109	+		BWI76_RS06995	0.82	+0.0
1,470,117	-		BWI76_RS06995	0.83	-0.8
1,470,202	+				-1.9
1,470,213	+				+1.8
1,470,215	-				+1.4
1,470,217	-				-0.2
1,470,218	+				+1.8
1,470,218	+				+1.0
1,470,218	+				-1.6
1,470,218	+				-1.5
1,470,218	+				-1.2
1,470,218	+				-0.3
1,470,218	+				+0.5
1,470,218	+				+1.8
1,470,223	+				+0.8
1,470,226	-				-1.5
1,470,228	+				-0.8
1,470,372	+				-0.2
1,470,377	+				-0.5
1,470,380	-				+2.0
1,470,382	+				+0.5
1,470,382	+				-0.0
1,470,382	+				-1.0
1,470,382	+				+0.8
1,470,401	+				+0.3
1,470,416	+				+0.7
1,470,424	-				+0.8
1,470,429	+				-0.4
1,470,476	+		BWI76_RS07000	0.15	-1.2
1,470,476	+		BWI76_RS07000	0.15	-1.5
1,470,476	+		BWI76_RS07000	0.15	-2.7
1,470,484	-		BWI76_RS07000	0.16	-1.0
1,470,487	+		BWI76_RS07000	0.16	+0.0
1,470,490	-		BWI76_RS07000	0.16	+0.8
1,470,490	-		BWI76_RS07000	0.16	-0.3
1,470,499	+		BWI76_RS07000	0.18	+0.5
1,470,541	+		BWI76_RS07000	0.22	-0.7
1,470,541	+		BWI76_RS07000	0.22	-0.7
1,470,549	-		BWI76_RS07000	0.23	+0.4
1,470,570	+		BWI76_RS07000	0.26	-0.2
1,470,578	-		BWI76_RS07000	0.27	+0.2
1,470,591	+		BWI76_RS07000	0.28	+0.2
1,470,594	-		BWI76_RS07000	0.28	+0.2
1,470,612	+		BWI76_RS07000	0.30	+1.2
1,470,630	-		BWI76_RS07000	0.32	-0.4
1,470,723	+		BWI76_RS07000	0.43	-1.8
1,470,773	-		BWI76_RS07000	0.49	-2.9
1,470,780	+		BWI76_RS07000	0.49	+1.8
1,470,788	+		BWI76_RS07000	0.50	+0.5
1,470,788	-		BWI76_RS07000	0.50	-1.5
1,470,837	+		BWI76_RS07000	0.56	+0.2
1,470,837	+		BWI76_RS07000	0.56	+0.2
1,470,837	+		BWI76_RS07000	0.56	-0.4
1,470,837	+		BWI76_RS07000	0.56	-0.6
1,470,837	+		BWI76_RS07000	0.56	-1.1
1,470,837	+		BWI76_RS07000	0.56	-0.6
1,470,837	+		BWI76_RS07000	0.56	-0.3
1,470,837	+		BWI76_RS07000	0.56	-2.9
1,470,837	+		BWI76_RS07000	0.56	+0.8
1,470,837	+		BWI76_RS07000	0.56	-1.5
1,470,837	+		BWI76_RS07000	0.56	+0.5
1,470,844	+		BWI76_RS07000	0.57	-2.1
1,470,845	-		BWI76_RS07000	0.57	+1.8
1,470,845	-		BWI76_RS07000	0.57	-1.2
1,470,845	-		BWI76_RS07000	0.57	+0.1
1,470,845	-		BWI76_RS07000	0.57	-0.5
1,470,845	-		BWI76_RS07000	0.57	+1.1
1,470,845	-		BWI76_RS07000	0.57	-0.2
1,470,845	-		BWI76_RS07000	0.57	-0.8
1,470,845	-		BWI76_RS07000	0.57	-0.6
1,470,852	-		BWI76_RS07000	0.58	-1.8
1,470,852	-		BWI76_RS07000	0.58	+0.3
1,470,871	-		BWI76_RS07000	0.60	+0.6
1,470,914	+		BWI76_RS07000	0.65	-0.2
1,470,920	+		BWI76_RS07000	0.65	+0.8
1,470,920	+		BWI76_RS07000	0.65	+0.1
1,470,928	-		BWI76_RS07000	0.66	-0.8
1,470,935	-		BWI76_RS07000	0.67	-0.8
1,470,950	+		BWI76_RS07000	0.69	-1.0
1,470,951	+		BWI76_RS07000	0.69	-0.8
1,471,026	-		BWI76_RS07000	0.77	-0.2
1,471,054	-		BWI76_RS07000	0.81	+0.4
1,471,056	+		BWI76_RS07000	0.81	+0.2
1,471,068	+		BWI76_RS07000	0.82	+0.8
1,471,076	+		BWI76_RS07000	0.83	-0.4
1,471,094	-		BWI76_RS07000	0.85	+2.4
1,471,094	-		BWI76_RS07000	0.85	-1.0
1,471,095	-		BWI76_RS07000	0.85	-1.2
1,471,120	+		BWI76_RS07000	0.88	+0.3
1,471,120	+		BWI76_RS07000	0.88	+0.2
1,471,120	+		BWI76_RS07000	0.88	+0.1
1,471,127	-		BWI76_RS07000	0.89	+0.8
1,471,130	+		BWI76_RS07000	0.89	-1.1