Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04370

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml
899,063	-		BWI76_RS04365	0.25	+0.9
899,113	-		BWI76_RS04365	0.30	-0.8
899,193	+		BWI76_RS04365	0.39	-0.5
899,199	+		BWI76_RS04365	0.39	+0.2
899,210	-		BWI76_RS04365	0.40	+0.2
899,267	-		BWI76_RS04365	0.47	-0.9
899,296	-		BWI76_RS04365	0.50	+0.6
899,346	+		BWI76_RS04365	0.55	-0.0
899,355	-		BWI76_RS04365	0.56	+0.6
899,369	-		BWI76_RS04365	0.57	-0.4
899,372	+		BWI76_RS04365	0.58	-0.9
899,372	+		BWI76_RS04365	0.58	+0.7
899,372	+				+0.7
899,372	+		BWI76_RS04365	0.58	-3.0
899,372	+		BWI76_RS04365	0.58	+1.3
899,372	+		BWI76_RS04365	0.58	-0.3
899,374	+		BWI76_RS04365	0.58	-2.3
899,374	+		BWI76_RS04365	0.58	-0.6
899,374	+		BWI76_RS04365	0.58	+1.3
899,378	-		BWI76_RS04365	0.58	-0.2
899,378	-		BWI76_RS04365	0.58	-0.3
899,378	-		BWI76_RS04365	0.58	-1.2
899,380	-		BWI76_RS04365	0.59	-1.3
899,380	-		BWI76_RS04365	0.59	+0.5
899,380	-		BWI76_RS04365	0.59	-1.3
899,380	-		BWI76_RS04365	0.59	+0.7
899,380	-		BWI76_RS04365	0.59	-0.7
899,380	-		BWI76_RS04365	0.59	-0.0
899,382	-		BWI76_RS04365	0.59	+0.7
899,475	+		BWI76_RS04365	0.69	+1.4
899,478	-		BWI76_RS04365	0.69	-0.5
899,480	+		BWI76_RS04365	0.69	-0.3
899,480	+		BWI76_RS04365	0.69	-0.3
899,512	+		BWI76_RS04365	0.73	-0.3
899,519	+				-0.3
899,534	+		BWI76_RS04365	0.75	-2.1
899,562	-		BWI76_RS04365	0.78	-1.6
899,562	-		BWI76_RS04365	0.78	+0.2
899,562	-		BWI76_RS04365	0.78	+0.0
899,562	-		BWI76_RS04365	0.78	+0.1
899,622	-		BWI76_RS04365	0.84	-0.6
899,624	+		BWI76_RS04365	0.85	-0.3
899,664	+		BWI76_RS04365	0.89	-2.0
899,674	+		BWI76_RS04365	0.90	+1.9
899,678	+				-0.4
899,678	+				+0.7
899,678	+				+1.1
899,678	+				-0.9
899,683	+				+1.1
899,683	+				+1.0
899,683	+				+0.7
899,683	+				+0.7
899,686	-				-1.2
899,688	+				-0.3
899,688	-				+1.4
899,691	-				-0.3
899,691	-				-1.9
899,691	-				+1.3
899,691	-				-0.9
899,691	-				-0.5
899,691	-				-0.9
899,691	-				+0.7
899,691	-				+0.9
899,701	+				-1.6
899,723	+				+0.7
899,723	-				+0.4
899,723	-				+0.4
899,731	-				-0.3
899,731	-				-0.7
899,776	+				-0.1
899,781	-				+0.5
899,784	-				+0.5
899,784	-				-1.5
899,786	-				-0.5
899,792	+				-0.2
899,805	-				-1.9
899,805	-				-0.5
899,901	-				+0.7
899,931	-				-0.9
899,999	+				-0.3
900,004	+				-0.4
900,004	+				+2.7
900,004	+				+1.2
900,004	+				+0.3
900,004	+				+0.9
900,004	+				-0.7
900,004	+				+1.5
900,012	-				-0.9
900,012	-				+0.3
900,012	-				-0.3
900,045	+				+0.7
900,062	-				+0.7
900,066	+				+4.3
900,074	-				-1.2
900,164	-		BWI76_RS04370	0.11	+0.1
900,173	-		BWI76_RS04370	0.12	-0.3
900,194	+		BWI76_RS04370	0.14	+0.4
900,198	+		BWI76_RS04370	0.14	+0.7
900,198	+		BWI76_RS04370	0.14	+1.7
900,206	-		BWI76_RS04370	0.15	+2.7
900,210	+		BWI76_RS04370	0.15	+2.3
900,218	-		BWI76_RS04370	0.16	+0.7
900,225	-		BWI76_RS04370	0.17	-1.4
900,225	-		BWI76_RS04370	0.17	-0.9
900,246	-		BWI76_RS04370	0.19	-0.3
900,279	+				+0.7
900,305	+		BWI76_RS04370	0.24	+0.1
900,315	+		BWI76_RS04370	0.25	+0.6
900,323	-		BWI76_RS04370	0.26	+1.2
900,328	+		BWI76_RS04370	0.27	+0.3
900,330	+		BWI76_RS04370	0.27	+1.5
900,330	+		BWI76_RS04370	0.27	+1.6
900,352	+		BWI76_RS04370	0.29	+1.0
900,365	+		BWI76_RS04370	0.30	+0.9
900,370	+		BWI76_RS04370	0.30	+0.7
900,447	-		BWI76_RS04370	0.38	+0.5
900,447	-		BWI76_RS04370	0.38	+0.4
900,461	+		BWI76_RS04370	0.39	+0.6
900,474	-		BWI76_RS04370	0.40	-0.6
900,489	-		BWI76_RS04370	0.42	-2.6
900,501	+		BWI76_RS04370	0.43	+2.4
900,509	-		BWI76_RS04370	0.44	+0.7
900,551	+		BWI76_RS04370	0.48	+1.0
900,564	-		BWI76_RS04370	0.49	+0.0
900,578	+		BWI76_RS04370	0.50	+0.6
900,604	+		BWI76_RS04370	0.53	+0.7
900,604	+		BWI76_RS04370	0.53	-0.3
900,604	+		BWI76_RS04370	0.53	+0.8
900,612	-		BWI76_RS04370	0.53	-0.3
900,612	-		BWI76_RS04370	0.53	-0.9
900,619	+		BWI76_RS04370	0.54	+1.3
900,619	+		BWI76_RS04370	0.54	+1.7
900,622	-		BWI76_RS04370	0.54	-0.6
900,624	-		BWI76_RS04370	0.55	-1.2
900,627	-		BWI76_RS04370	0.55	-0.6
900,635	+		BWI76_RS04370	0.56	-0.1
900,643	-		BWI76_RS04370	0.56	-0.9
900,645	-		BWI76_RS04370	0.57	+1.2
900,645	-		BWI76_RS04370	0.57	-0.9
900,649	+				+0.7
900,657	-		BWI76_RS04370	0.58	+0.0
900,665	+		BWI76_RS04370	0.58	+1.0
900,704	+		BWI76_RS04370	0.62	-1.8
900,735	+		BWI76_RS04370	0.65	+1.6
900,735	+		BWI76_RS04370	0.65	-0.3
900,743	-		BWI76_RS04370	0.66	-1.0
900,755	+		BWI76_RS04370	0.67	+0.7
900,756	+		BWI76_RS04370	0.67	-1.3
900,762	+		BWI76_RS04370	0.68	+0.3
900,764	-		BWI76_RS04370	0.68	+0.0
900,790	+		BWI76_RS04370	0.70	-0.3
900,811	+		BWI76_RS04370	0.72	-0.5
900,816	+		BWI76_RS04370	0.73	-0.5
900,824	+		BWI76_RS04370	0.73	+1.7
900,824	-		BWI76_RS04370	0.73	+1.7
900,832	+		BWI76_RS04370	0.74	+1.3
900,840	-		BWI76_RS04370	0.75	+0.7
900,840	-		BWI76_RS04370	0.75	-2.1
900,847	+		BWI76_RS04370	0.76	+0.7
900,847	+		BWI76_RS04370	0.76	+0.7
900,847	+		BWI76_RS04370	0.76	-0.6
900,855	-		BWI76_RS04370	0.76	+1.7
900,881	+		BWI76_RS04370	0.79	+0.7
900,934	+		BWI76_RS04370	0.84	-0.6
900,950	+		BWI76_RS04370	0.85	+0.5
900,950	+		BWI76_RS04370	0.85	-0.3
900,950	+		BWI76_RS04370	0.85	-0.5
900,958	-		BWI76_RS04370	0.86	-0.3
900,983	+		BWI76_RS04370	0.89	+0.8
900,983	+		BWI76_RS04370	0.89	+0.7
900,983	+		BWI76_RS04370	0.89	-0.3
900,983	+		BWI76_RS04370	0.89	+2.2
900,983	+		BWI76_RS04370	0.89	-0.3
900,983	+		BWI76_RS04370	0.89	+1.4
900,983	-		BWI76_RS04370	0.89	+0.7
900,991	-		BWI76_RS04370	0.89	+0.7
900,991	-		BWI76_RS04370	0.89	-0.3
900,991	-		BWI76_RS04370	0.89	+1.3
900,991	-		BWI76_RS04370	0.89	-0.9
900,991	-		BWI76_RS04370	0.89	-0.3
900,991	-		BWI76_RS04370	0.89	-0.3
900,991	-		BWI76_RS04370	0.89	+0.2
900,996	+				+0.7
900,999	+				-1.3
901,006	+				+0.3
901,006	+				+0.7
901,006	+				+1.1
901,006	+				+1.1
901,006	+				+0.7
901,006	+				+0.9
901,006	+				+1.0
901,006	+				+0.6
901,006	+				+0.9
901,006	+				+0.7
901,006	+				-0.2
901,006	+				+0.5
901,006	+				-0.3
901,006	+				+1.3
901,006	+				-0.3
901,006	+				+0.7
901,014	-				+0.7
901,014	-				-0.9
901,014	-				+0.5
901,014	-				-1.4
901,014	-				-1.9
901,014	-				-1.9
901,014	-				+1.7
901,014	-				-0.3
901,014	-				-0.5
901,014	-				-1.1
901,020	+				-0.0
901,020	+				-0.3
901,028	+				-1.3
901,028	-				+0.1
901,028	-				-2.9
901,028	-				-2.1
901,032	+				+2.3
901,032	+				-0.1
901,032	+				+1.7
901,040	-				+1.7
901,052	+				+0.7
901,052	+				-0.5
901,052	+				+2.0
901,060	-				+0.1
901,060	-				+0.2
901,062	+				+0.7
901,062	-				+1.1
901,070	-				+0.3
901,070	-				-0.5
901,086	+				+0.9
901,094	-				+0.2
901,098	+				-1.3
901,111	+				+1.5
901,119	-				+1.7
901,144	+				-1.3
901,149	+				+0.2
901,149	+				+1.4
901,156	+				+1.5
901,157	-				+1.1
901,157	-				-2.0
901,164	+				-0.6
901,172	-				+0.2
901,197	-				+0.5
901,201	+				+0.7
901,268	+				-0.7
901,276	-				-1.9
901,277	-				-0.8
901,277	-				+2.0
901,282	+				-0.4
901,282	+				-0.1
901,308	+				-1.1
901,310	-				-1.2
901,319	+				-0.6
901,327	-				-1.2
901,329	+				-1.9
901,336	+				-0.9
901,350	-				-1.9
901,358	+		BWI76_RS04375	0.10	-0.7
901,358	+		BWI76_RS04375	0.10	-0.2
901,358	-		BWI76_RS04375	0.10	-1.3
901,366	-		BWI76_RS04375	0.11	-0.3
901,368	+		BWI76_RS04375	0.11	+0.7
901,370	+		BWI76_RS04375	0.11	-0.5
901,370	+		BWI76_RS04375	0.11	+0.7
901,375	+		BWI76_RS04375	0.12	-0.2
901,375	+		BWI76_RS04375	0.12	-1.4
901,375	+		BWI76_RS04375	0.12	-1.0
901,376	-		BWI76_RS04375	0.12	+0.7
901,376	-		BWI76_RS04375	0.12	-0.3
901,376	-		BWI76_RS04375	0.12	+0.7
901,378	-				-0.3
901,391	-		BWI76_RS04375	0.13	+0.8
901,397	+		BWI76_RS04375	0.13	-0.6
901,397	+		BWI76_RS04375	0.13	+0.1
901,397	+		BWI76_RS04375	0.13	+0.2
901,405	-		BWI76_RS04375	0.14	+0.5
901,471	+		BWI76_RS04375	0.18	-1.3
901,471	+		BWI76_RS04375	0.18	-1.6
901,475	+		BWI76_RS04375	0.18	-0.8
901,478	-		BWI76_RS04375	0.19	-0.9
901,479	-		BWI76_RS04375	0.19	-0.6
901,479	-		BWI76_RS04375	0.19	+0.3
901,479	-		BWI76_RS04375	0.19	-0.8
901,481	+		BWI76_RS04375	0.19	+0.1
901,482	-		BWI76_RS04375	0.19	+0.3
901,496	+		BWI76_RS04375	0.20	-0.2
901,496	+		BWI76_RS04375	0.20	-0.7
901,504	-				-0.3
901,504	-		BWI76_RS04375	0.21	+1.3
901,510	-		BWI76_RS04375	0.21	-1.1
901,547	+		BWI76_RS04375	0.24	+0.3
901,547	+		BWI76_RS04375	0.24	+0.6
901,585	+		BWI76_RS04375	0.26	+0.7
901,586	-		BWI76_RS04375	0.26	+0.5
901,590	+		BWI76_RS04375	0.26	-0.0
901,590	+		BWI76_RS04375	0.26	-1.1
901,590	+		BWI76_RS04375	0.26	-0.2
901,590	+		BWI76_RS04375	0.26	+0.1
901,590	+		BWI76_RS04375	0.26	+0.4
901,590	+				+0.7
901,590	+		BWI76_RS04375	0.26	-1.9
901,590	+		BWI76_RS04375	0.26	-0.9
901,590	+		BWI76_RS04375	0.26	-1.1
901,593	-		BWI76_RS04375	0.27	-1.4
901,593	-		BWI76_RS04375	0.27	-0.0
901,595	+		BWI76_RS04375	0.27	+0.1
901,597	-		BWI76_RS04375	0.27	+0.1
901,598	+		BWI76_RS04375	0.27	-1.2
901,598	-		BWI76_RS04375	0.27	+0.2
901,598	-		BWI76_RS04375	0.27	-3.4
901,598	-		BWI76_RS04375	0.27	+0.4
901,598	-		BWI76_RS04375	0.27	+0.3
901,598	-		BWI76_RS04375	0.27	-0.7
901,598	-		BWI76_RS04375	0.27	-0.3
901,598	-		BWI76_RS04375	0.27	-1.9
901,607	+		BWI76_RS04375	0.28	+0.7
901,607	+		BWI76_RS04375	0.28	+0.4
901,607	+		BWI76_RS04375	0.28	+0.7
901,607	+		BWI76_RS04375	0.28	-1.9
901,607	+		BWI76_RS04375	0.28	+0.7
901,607	+		BWI76_RS04375	0.28	+0.8
901,607	+		BWI76_RS04375	0.28	-1.3
901,615	-		BWI76_RS04375	0.28	+0.2
901,615	-		BWI76_RS04375	0.28	-1.7
901,615	-		BWI76_RS04375	0.28	-2.5
901,615	-		BWI76_RS04375	0.28	-0.2
901,615	-		BWI76_RS04375	0.28	-3.0
901,615	-		BWI76_RS04375	0.28	-1.1
901,615	-		BWI76_RS04375	0.28	-0.5
901,615	-		BWI76_RS04375	0.28	+0.4
901,615	-		BWI76_RS04375	0.28	-0.3
901,621	-		BWI76_RS04375	0.29	-0.6
901,636	+		BWI76_RS04375	0.30	-0.8
901,638	+		BWI76_RS04375	0.30	+1.7
901,638	+		BWI76_RS04375	0.30	+0.3
901,644	-		BWI76_RS04375	0.30	+0.1
901,646	-		BWI76_RS04375	0.30	-1.0
901,685	+		BWI76_RS04375	0.33	-0.5
901,685	+		BWI76_RS04375	0.33	+0.4
901,685	+				-0.3
901,685	+		BWI76_RS04375	0.33	-0.7
901,693	-		BWI76_RS04375	0.34	-0.2
901,703	+		BWI76_RS04375	0.34	-1.2
901,704	-		BWI76_RS04375	0.34	-0.1
901,704	-		BWI76_RS04375	0.34	-0.7
901,711	-		BWI76_RS04375	0.35	-0.6
901,712	-		BWI76_RS04375	0.35	-1.1
901,717	-		BWI76_RS04375	0.35	+0.5
901,724	-		BWI76_RS04375	0.36	-2.1
901,736	+		BWI76_RS04375	0.37	-0.3
901,757	+		BWI76_RS04375	0.38	-0.3
901,757	+		BWI76_RS04375	0.38	-1.2
901,757	+		BWI76_RS04375	0.38	+0.5
901,757	+		BWI76_RS04375	0.38	-0.5
901,757	+		BWI76_RS04375	0.38	-0.3
901,757	+		BWI76_RS04375	0.38	-0.9
901,757	+		BWI76_RS04375	0.38	-0.9
901,757	+		BWI76_RS04375	0.38	-0.9
901,765	-		BWI76_RS04375	0.39	+0.2
901,765	-		BWI76_RS04375	0.39	+0.7
901,781	+		BWI76_RS04375	0.40	-1.4
901,781	+		BWI76_RS04375	0.40	-0.1
901,788	+		BWI76_RS04375	0.40	-2.0
901,789	-		BWI76_RS04375	0.40	+0.6
901,789	-		BWI76_RS04375	0.40	-2.3
901,789	-		BWI76_RS04375	0.40	+0.2
901,862	+		BWI76_RS04375	0.45	-1.1
901,875	-		BWI76_RS04375	0.46	-1.8
901,876	-		BWI76_RS04375	0.46	-0.9
901,905	-				+0.7
901,935	+		BWI76_RS04375	0.51	+0.4
901,935	+		BWI76_RS04375	0.51	-0.0
901,943	+		BWI76_RS04375	0.51	+0.3
901,951	-		BWI76_RS04375	0.52	-0.1
901,951	-		BWI76_RS04375	0.52	-2.2
901,953	+		BWI76_RS04375	0.52	+0.0
901,996	+		BWI76_RS04375	0.55	+0.7
901,996	+		BWI76_RS04375	0.55	+0.4
901,997	+		BWI76_RS04375	0.55	-2.1
902,004	-		BWI76_RS04375	0.55	+0.3
902,031	+		BWI76_RS04375	0.57	-1.0
902,039	+		BWI76_RS04375	0.58	-0.2
902,065	+		BWI76_RS04375	0.60	+0.7
902,084	+		BWI76_RS04375	0.61	-0.5
902,084	+		BWI76_RS04375	0.61	-0.9
902,084	+		BWI76_RS04375	0.61	+0.0
902,084	+		BWI76_RS04375	0.61	-0.6
902,088	+		BWI76_RS04375	0.61	-1.0
902,092	-		BWI76_RS04375	0.62	-2.1
902,093	+		BWI76_RS04375	0.62	+0.7
902,094	-		BWI76_RS04375	0.62	+1.7
902,098	+		BWI76_RS04375	0.62	+1.3
902,101	-		BWI76_RS04375	0.62	-0.5
902,101	-		BWI76_RS04375	0.62	-0.3