Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4072

Experiment: BHIS with Simvastatin 30 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4070 and BT4071 are separated by 75 nucleotidesBT4071 and BT4072 are separated by 7 nucleotidesBT4072 and BT4073 are separated by 34 nucleotides BT4070: BT4070 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 5,303,772 to 5,304,296 BT4070 BT4071: BT4071 - hypothetical protein (NCBI ptt file), at 5,304,372 to 5,304,602 BT4071 BT4072: BT4072 - alpha-mannosidase (NCBI ptt file), at 5,304,610 to 5,307,159 BT4072 BT4073: BT4073 - conserved hypothetical protein (NCBI ptt file), at 5,307,194 to 5,309,542 BT4073 Position (kb) 5304 5305 5306 5307 5308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5303.648 kb on + strandat 5303.757 kb on + strandat 5303.758 kb on - strandat 5303.803 kb on - strandat 5303.888 kb on - strand, within BT4070at 5303.888 kb on - strand, within BT4070at 5303.934 kb on + strand, within BT4070at 5303.982 kb on - strand, within BT4070at 5304.049 kb on + strand, within BT4070at 5304.059 kb on - strand, within BT4070at 5304.063 kb on - strand, within BT4070at 5304.163 kb on + strand, within BT4070at 5304.230 kb on - strand, within BT4070at 5304.279 kb on - strandat 5304.302 kb on - strandat 5304.310 kb on + strandat 5304.335 kb on - strandat 5304.582 kb on - strandat 5304.582 kb on - strandat 5304.621 kb on + strandat 5304.625 kb on - strandat 5304.625 kb on - strandat 5304.632 kb on + strandat 5304.649 kb on - strandat 5304.710 kb on - strandat 5304.710 kb on - strandat 5304.794 kb on + strandat 5304.824 kb on + strandat 5304.861 kb on - strandat 5304.864 kb on - strandat 5304.898 kb on + strand, within BT4072at 5304.916 kb on + strand, within BT4072at 5304.917 kb on - strand, within BT4072at 5304.942 kb on - strand, within BT4072at 5304.971 kb on + strand, within BT4072at 5305.000 kb on - strand, within BT4072at 5305.006 kb on + strand, within BT4072at 5305.006 kb on + strand, within BT4072at 5305.050 kb on - strand, within BT4072at 5305.068 kb on + strand, within BT4072at 5305.080 kb on - strand, within BT4072at 5305.111 kb on + strand, within BT4072at 5305.124 kb on - strand, within BT4072at 5305.391 kb on - strand, within BT4072at 5305.402 kb on - strand, within BT4072at 5305.414 kb on - strand, within BT4072at 5305.452 kb on - strand, within BT4072at 5305.452 kb on - strand, within BT4072at 5305.509 kb on + strand, within BT4072at 5305.552 kb on - strand, within BT4072at 5305.552 kb on - strand, within BT4072at 5305.655 kb on - strand, within BT4072at 5305.655 kb on - strand, within BT4072at 5305.695 kb on - strand, within BT4072at 5305.719 kb on + strand, within BT4072at 5305.749 kb on + strand, within BT4072at 5305.749 kb on + strand, within BT4072at 5305.750 kb on - strand, within BT4072at 5305.812 kb on + strand, within BT4072at 5305.816 kb on - strand, within BT4072at 5305.898 kb on - strand, within BT4072at 5305.994 kb on - strand, within BT4072at 5305.998 kb on + strand, within BT4072at 5305.999 kb on - strand, within BT4072at 5306.009 kb on + strand, within BT4072at 5306.010 kb on - strand, within BT4072at 5306.010 kb on - strand, within BT4072at 5306.019 kb on + strand, within BT4072at 5306.065 kb on + strand, within BT4072at 5306.065 kb on + strand, within BT4072at 5306.089 kb on - strand, within BT4072at 5306.188 kb on - strand, within BT4072at 5306.206 kb on + strand, within BT4072at 5306.275 kb on - strand, within BT4072at 5306.277 kb on + strand, within BT4072at 5306.330 kb on + strand, within BT4072at 5306.338 kb on - strand, within BT4072at 5306.339 kb on + strand, within BT4072at 5306.339 kb on + strand, within BT4072at 5306.339 kb on + strand, within BT4072at 5306.340 kb on - strand, within BT4072at 5306.340 kb on - strand, within BT4072at 5306.340 kb on - strand, within BT4072at 5306.340 kb on - strand, within BT4072at 5306.386 kb on - strand, within BT4072at 5306.407 kb on - strand, within BT4072at 5306.427 kb on + strand, within BT4072at 5306.452 kb on + strand, within BT4072at 5306.452 kb on + strandat 5306.475 kb on - strand, within BT4072at 5306.475 kb on - strand, within BT4072at 5306.511 kb on + strand, within BT4072at 5306.638 kb on + strand, within BT4072at 5306.638 kb on + strand, within BT4072at 5306.664 kb on + strand, within BT4072at 5306.667 kb on + strand, within BT4072at 5306.668 kb on - strand, within BT4072at 5306.668 kb on - strand, within BT4072at 5306.747 kb on - strand, within BT4072at 5306.749 kb on - strand, within BT4072at 5306.749 kb on - strand, within BT4072at 5306.777 kb on - strand, within BT4072at 5306.781 kb on + strand, within BT4072at 5306.782 kb on - strand, within BT4072at 5306.782 kb on - strand, within BT4072at 5306.782 kb on - strand, within BT4072at 5306.782 kb on - strand, within BT4072at 5306.818 kb on - strand, within BT4072at 5306.820 kb on - strand, within BT4072at 5306.863 kb on - strand, within BT4072at 5306.901 kb on - strand, within BT4072at 5307.001 kb on - strandat 5307.004 kb on - strandat 5307.016 kb on - strandat 5307.030 kb on + strandat 5307.185 kb on - strandat 5307.310 kb on + strandat 5307.319 kb on + strandat 5307.357 kb on + strandat 5307.362 kb on - strandat 5307.437 kb on - strand, within BT4073at 5307.437 kb on - strand, within BT4073at 5307.449 kb on - strand, within BT4073at 5307.449 kb on - strand, within BT4073at 5307.584 kb on - strand, within BT4073at 5307.586 kb on + strand, within BT4073at 5307.587 kb on - strand, within BT4073at 5307.587 kb on - strand, within BT4073at 5307.609 kb on - strand, within BT4073at 5307.609 kb on - strand, within BT4073at 5307.644 kb on + strand, within BT4073at 5307.646 kb on + strand, within BT4073at 5307.667 kb on + strand, within BT4073at 5307.816 kb on - strand, within BT4073at 5307.816 kb on - strand, within BT4073at 5307.817 kb on + strand, within BT4073at 5307.818 kb on - strand, within BT4073at 5307.900 kb on - strand, within BT4073at 5307.902 kb on + strand, within BT4073at 5307.928 kb on + strand, within BT4073at 5307.990 kb on + strand, within BT4073at 5307.995 kb on - strand, within BT4073at 5308.012 kb on + strand, within BT4073at 5308.013 kb on - strand, within BT4073at 5308.013 kb on - strand, within BT4073

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Simvastatin 30 uM
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5,303,648 + -1.2
5,303,757 + -2.0
5,303,758 - -4.6
5,303,803 - -1.6
5,303,888 - BT4070 0.22 -1.1
5,303,888 - BT4070 0.22 -2.0
5,303,934 + BT4070 0.31 -1.0
5,303,982 - BT4070 0.40 +0.6
5,304,049 + BT4070 0.53 +0.4
5,304,059 - BT4070 0.55 -1.0
5,304,063 - BT4070 0.55 -4.1
5,304,163 + BT4070 0.74 +2.3
5,304,230 - BT4070 0.87 -2.6
5,304,279 - -2.0
5,304,302 - -1.0
5,304,310 + -2.0
5,304,335 - -2.6
5,304,582 - -2.3
5,304,582 - -1.4
5,304,621 + -2.6
5,304,625 - -2.0
5,304,625 - +0.0
5,304,632 + -1.6
5,304,649 - +0.0
5,304,710 - -1.4
5,304,710 - -1.4
5,304,794 + -3.0
5,304,824 + -2.0
5,304,861 - +0.0
5,304,864 - -1.1
5,304,898 + BT4072 0.11 +1.0
5,304,916 + BT4072 0.12 -3.2
5,304,917 - BT4072 0.12 -1.6
5,304,942 - BT4072 0.13 -0.6
5,304,971 + BT4072 0.14 -0.1
5,305,000 - BT4072 0.15 -1.6
5,305,006 + BT4072 0.16 -2.0
5,305,006 + BT4072 0.16 +0.0
5,305,050 - BT4072 0.17 -1.6
5,305,068 + BT4072 0.18 -1.0
5,305,080 - BT4072 0.18 -3.5
5,305,111 + BT4072 0.20 +0.0
5,305,124 - BT4072 0.20 -0.4
5,305,391 - BT4072 0.31 -1.0
5,305,402 - BT4072 0.31 -1.1
5,305,414 - BT4072 0.32 -1.6
5,305,452 - BT4072 0.33 +0.0
5,305,452 - BT4072 0.33 +0.0
5,305,509 + BT4072 0.35 -1.6
5,305,552 - BT4072 0.37 +0.0
5,305,552 - BT4072 0.37 -1.6
5,305,655 - BT4072 0.41 -0.8
5,305,655 - BT4072 0.41 +0.0
5,305,695 - BT4072 0.43 -2.0
5,305,719 + BT4072 0.43 -2.4
5,305,749 + BT4072 0.45 +2.3
5,305,749 + BT4072 0.45 +2.3
5,305,750 - BT4072 0.45 -0.1
5,305,812 + BT4072 0.47 +0.0
5,305,816 - BT4072 0.47 +0.0
5,305,898 - BT4072 0.51 -1.0
5,305,994 - BT4072 0.54 +0.0
5,305,998 + BT4072 0.54 +1.0
5,305,999 - BT4072 0.54 +0.0
5,306,009 + BT4072 0.55 +1.6
5,306,010 - BT4072 0.55 -3.8
5,306,010 - BT4072 0.55 -3.6
5,306,019 + BT4072 0.55 -1.2
5,306,065 + BT4072 0.57 +0.0
5,306,065 + BT4072 0.57 +0.7
5,306,089 - BT4072 0.58 -3.0
5,306,188 - BT4072 0.62 -2.3
5,306,206 + BT4072 0.63 +0.6
5,306,275 - BT4072 0.65 -0.1
5,306,277 + BT4072 0.65 -0.6
5,306,330 + BT4072 0.67 +3.2
5,306,338 - BT4072 0.68 -2.6
5,306,339 + BT4072 0.68 +0.7
5,306,339 + BT4072 0.68 +2.7
5,306,339 + BT4072 0.68 -1.0
5,306,340 - BT4072 0.68 +0.0
5,306,340 - BT4072 0.68 -2.5
5,306,340 - BT4072 0.68 -2.3
5,306,340 - BT4072 0.68 -2.0
5,306,386 - BT4072 0.70 -1.6
5,306,407 - BT4072 0.70 -0.8
5,306,427 + BT4072 0.71 -1.8
5,306,452 + BT4072 0.72 +0.7
5,306,452 + -1.6
5,306,475 - BT4072 0.73 -1.0
5,306,475 - BT4072 0.73 -0.9
5,306,511 + BT4072 0.75 -1.6
5,306,638 + BT4072 0.80 +0.0
5,306,638 + BT4072 0.80 +0.0
5,306,664 + BT4072 0.81 -1.0
5,306,667 + BT4072 0.81 -2.0
5,306,668 - BT4072 0.81 -1.6
5,306,668 - BT4072 0.81 -1.6
5,306,747 - BT4072 0.84 -1.6
5,306,749 - BT4072 0.84 -2.8
5,306,749 - BT4072 0.84 -1.6
5,306,777 - BT4072 0.85 +0.0
5,306,781 + BT4072 0.85 +0.0
5,306,782 - BT4072 0.85 -0.6
5,306,782 - BT4072 0.85 +0.0
5,306,782 - BT4072 0.85 -1.3
5,306,782 - BT4072 0.85 -0.1
5,306,818 - BT4072 0.87 -2.3
5,306,820 - BT4072 0.87 -2.0
5,306,863 - BT4072 0.88 +0.0
5,306,901 - BT4072 0.90 -0.8
5,307,001 - -1.1
5,307,004 - -1.6
5,307,016 - -2.0
5,307,030 + +2.2
5,307,185 - -1.0
5,307,310 + -1.0
5,307,319 + -1.0
5,307,357 + -1.6
5,307,362 - -1.0
5,307,437 - BT4073 0.10 -2.6
5,307,437 - BT4073 0.10 +0.4
5,307,449 - BT4073 0.11 -1.6
5,307,449 - BT4073 0.11 -2.8
5,307,584 - BT4073 0.17 +0.0
5,307,586 + BT4073 0.17 +0.0
5,307,587 - BT4073 0.17 +0.0
5,307,587 - BT4073 0.17 -0.4
5,307,609 - BT4073 0.18 -3.4
5,307,609 - BT4073 0.18 -1.6
5,307,644 + BT4073 0.19 -1.6
5,307,646 + BT4073 0.19 +0.0
5,307,667 + BT4073 0.20 -2.2
5,307,816 - BT4073 0.26 -0.1
5,307,816 - BT4073 0.26 -0.3
5,307,817 + BT4073 0.27 -2.3
5,307,818 - BT4073 0.27 -2.0
5,307,900 - BT4073 0.30 +0.3
5,307,902 + BT4073 0.30 -1.0
5,307,928 + BT4073 0.31 +0.0
5,307,990 + BT4073 0.34 -2.6
5,307,995 - BT4073 0.34 +0.0
5,308,012 + BT4073 0.35 -3.2
5,308,013 - BT4073 0.35 +0.3
5,308,013 - BT4073 0.35 -2.3

Or see this region's nucleotide sequence